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Register a new userDistributed Training of Embeddings using Graph Analytics
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Gurbinder Gill
Publication date
2019
fields
Informatics Engineering
and research's language is
English
Authors
Gurbinder Gill
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Many applications today, such as NLP, network analysis, and code analysis, rely on semantically embedding objects into low-dimensional fixed-length vectors. Such embeddings naturally provide a way to perform useful downstream tasks, such as identifying relations among objects or predicting objects for a given context, etc. Unfortunately, the training necessary for accurate embeddings is usually computationally intensive and requires processing large amounts of data. Furthermore, distributing this training is challenging. Most embedding training uses stochastic gradient descent (SGD), an inherently sequential algorithm. Prior approaches to parallelizing SGD do not honor these dependencies and thus potentially suffer poor convergence. This paper presents a distributed training framework for a class of applications that use Skip-gram-like models to generate embeddings. We call this class Any2Vec and it includes Word2Vec, DeepWalk, and Node2Vec among others. We first formulate Any2Vec training algorithm as a graph application and leverage the state-of-the-art distributed graph analytics framework, D-Galois. We adapt D-Galois to support dynamic graph generation and repartitioning, and incorporate novel communication optimizations. Finally, we introduce a novel way to combine gradients during distributed training to prevent accuracy loss. We show that our framework, called GraphAny2Vec, matches on a cluster of 32 hosts the accuracy of the state-of-the-art shared-memory implementations of Word2Vec and Vertex2Vec on 1 host, and gives a geo-mean speedup of 12x and 5x respectively. Furthermore, GraphAny2Vec is on average 2x faster than the state-of-the-art distributed Word2Vec implementation, DMTK, on 32 hosts. We also show the superiority of our Gradient Combiner independent of GraphAny2Vec by incorporating it in DMTK, which raises its accuracy by > 30%.
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The graph convolutional network (GCN) is a go-to solution for machine learning on graphs, but its training is notoriously difficult to scale both in terms of graph size and the number of model parameters. Although some work has explored training on large-scale graphs (e.g., GraphSAGE, ClusterGCN, etc.), we pioneer efficient training of large-scale GCN models (i.e., ultra-wide, overparameterized models) with the proposal of a novel, distributed training framework. Our proposed training methodology, called GIST, disjointly partitions the parameters of a GCN model into several, smaller sub-GCNs that are trained independently and in parallel. In addition to being compatible with any GCN architecture, GIST improves model performance, scales to training on arbitrarily large graphs, significantly decreases wall-clock training time, and enables the training of markedly overparameterized GCN models. Remarkably, with GIST, we train an astonishgly-wide 32,768-dimensional GraphSAGE model, which exceeds the capacity of a single GPU by a factor of 8X, to SOTA performance on the Amazon2M dataset.
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We propose a new framework for computing the embeddings of large-scale graphs on a single machine. A graph embedding is a fixed length vector representation for each node (and/or edge-type) in a graph and has emerged as the de-facto approach to apply modern machine learning on graphs. We identify that current systems for learning the embeddings of large-scale graphs are bottlenecked by data movement, which results in poor resource utilization and inefficient training. These limitations require state-of-the-art systems to distribute training across multiple machines. We propose Marius, a system for efficient training of graph embeddings that leverages partition caching and buffer-aware data orderings to minimize disk access and interleaves data movement with computation to maximize utilization. We compare Marius against two state-of-the-art industrial systems on a diverse array of benchmarks. We demonstrate that Marius achieves the same level of accuracy but is up to one order of magnitude faster. We also show that Marius can scale training to datasets an order of magnitude beyond a single machines GPU and CPU memory capacity, enabling training of configurations with more than a billion edges and 550 GB of total parameters on a single machine with 16 GB of GPU memory and 64 GB of CPU memory. Marius is open-sourced at www.marius-project.org.
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