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Register a new userPhysical machine learning outperforms human learning in Quantum Chemistry
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Two types of approaches to modeling molecular systems have demonstrated high practical efficiency. Density functional theory (DFT), the most widely used quantum chemical method, is a physical approach predicting energies and electron densities of molecules. Recently, numerous papers on machine learning (ML) of molecular properties have also been published. ML models greatly outperform DFT in terms of computational costs, and may even reach comparable accuracy, but they are missing physicality - a direct link to Quantum Physics - which limits their applicability. Here, we propose an approach that combines the strong sides of DFT and ML, namely, physicality and low computational cost. By generalizing the famous Hohenberg-Kohn theorems, we derive general equations for exact electron densities and energies that can naturally guide applications of ML in Quantum Chemistry. Based on these equations, we build a deep neural network that can compute electron densities and energies of a wide range of organic molecules not only much faster, but also closer to exact physical values than curre
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Machine learning models are poised to make a transformative impact on chemical sciences by dramatically accelerating computational algorithms and amplifying insights available from computational chemistry methods. However, achieving this requires a confluence and coaction of expertise in computer science and physical sciences. This review is written for new and experienced researchers working at the intersection of both fields. We first provide concise tutorials of computational chemistry and machine learning methods, showing how insights involving both can be achieved. We then follow with a critical review of noteworthy applications that demonstrate how computational chemistry and machine learning can be used together to provide insightful (and useful) predictions in molecular and materials modeling, retrosyntheses, catalysis, and drug design.
The applications of machine learning techniques to chemistry and materials science become more numerous by the day. The main challenge is to devise representations of atomic systems that are at the same time complete and concise, so as to reduce the number of reference calculations that are needed to predict the properties of different types of materials reliably. This has led to a proliferation of alternative ways to convert an atomic structure into an input for a machine-learning model. We introduce an abstract definition of chemical environments that is based on a smoothed atomic density, using a bra-ket notation to emphasize basis set independence and to highlight the connections with some popular choices of representations for describing atomic systems. The correlations between the spatial distribution of atoms and their chemical identities are computed as inner products between these feature kets, which can be given an explicit representation in terms of the expansion of the atom density on orthogonal basis functions, that is equivalent to the smooth overlap of atomic positions (SOAP) power spectrum, but also in real space, corresponding to $n$-body correlations of the atom density. This formalism lays the foundations for a more systematic tuning of the behavior of the representations, by introducing operators that represent the correlations between structure, composition, and the target properties. It provides a unifying picture of recent developments in the field and indicates a way forward towards more effective and computationally affordable machine-learning schemes for molecules and materials.
Statistical learning algorithms are finding more and more applications in science and technology. Atomic-scale modeling is no exception, with machine learning becoming commonplace as a tool to predict energy, forces and properties of molecules and condensed-phase systems. This short review summarizes recent progress in the field, focusing in particular on the problem of representing an atomic configuration in a mathematically robust and computationally efficient way. We also discuss some of the regression algorithms that have been used to construct surrogate models of atomic-scale properties. We then show examples of how the optimization of the machine-learning models can both incorporate and reveal insights onto the physical phenomena that underlie structure-property relations.
The concept of machine learning configuration interaction (MLCI) [J. Chem. Theory Comput. 2018, 14, 5739], where an artificial neural network (ANN) learns on the fly to select important configurations, is further developed so that accurate ab initio potential energy curves can be efficiently calculated. This development includes employing the artificial neural network also as a hash function for the efficient deletion of duplicates on the fly so that the singles and doubles space does not need to be stored and this barrier to scalability is removed. In addition configuration state functions are introduced into the approach so that pure spin states are guaranteed, and the transferability of data between geometries is exploited. This improved approach is demonstrated on potential energy curves for the nitrogen molecule, water, and carbon monoxide. The results are compared with full configuration interaction values, when available, and different transfer protocols are investigated. It is shown that, for all of the considered systems, accurate potential energy curves can now be efficiently computed with MLCI. For the potential curves of N$_{2}$ and CO, MLCI can achieve lower errors than stochastically selecting configurations while also using substantially less processor hours.
Quantum scattering calculations for all but low-dimensional systems at low energies must rely on approximations. All approximations introduce errors. The impact of these errors is often difficult to assess because they depend on the Hamiltonian parameters and the particular observable under study. Here, we illustrate a general, system and approximation-independent, approach to improve the accuracy of quantum dynamics approximations. The method is based on a Bayesian machine learning (BML) algorithm that is trained by a small number of rigorous results and a large number of approximate calculations, resulting in ML models that accurately capture the dependence of the dynamics results on the quantum dynamics parameters. Most importantly, the present work demonstrates that the BML models can generalize quantum results to different dynamical processes. Thus, a ML model trained by a combination of approximate and rigorous results for a certain inelastic transition can make accurate predictions for different transitions without rigorous calculations. This opens the possibility of improving the accuracy of approximate calculations for quantum transitions that are out of reach of rigorous scattering calculations.
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