Do you want to publish a course? Click here

Efficient simulation of filament elastohydrodynamics in three dimensions

55   0   0.0 ( 0 )
 Added by Benjamin Walker
 Publication date 2019
  fields Physics
and research's language is English




Ask ChatGPT about the research

Fluid-structure simulations of slender inextensible filaments in a viscous fluid are often plagued by numerical stiffness. Recent coarse-graining studies have reduced the computational requirements of simulating such systems, though have thus far been limited to the motion of planar filaments. In this work we extend such frameworks to filament motion in three dimensions, identifying and circumventing coordinate-system singularities introduced by filament parameterisation via repeated changes of basis. The resulting methodology enables efficient and rapid study of the motion of flexible filaments in three dimensions, and is readily extensible to a wide range of problems, including filament motion in confined geometries, large-scale active matter simulations, and the motility of mammalian spermatozoa.



rate research

Read More

We present a numerical method specifically designed for simulating three-dimensional fluid--structure interaction (FSI) problems based on the reference map technique (RMT). The RMT is a fully Eulerian FSI numerical method that allows fluids and large-deformation elastic solids to be represented on a single fixed computational grid. This eliminates the need for meshing complex geometries typical in other FSI approaches, and greatly simplifies the coupling between fluid and solids. We develop the first three-dimensional implementation of the RMT, parallelized using the distributed memory paradigm, to simulate incompressible FSI with neo-Hookean solids. As part of our new method, we develop a new field extrapolation scheme that works efficiently in parallel. Through representative examples, we demonstrate the methods accuracy and convergence, as well as its suitability in investigating many-body and active systems. The examples include settling of a mixture of heavy and buoyant soft ellipsoids, lid-driven cavity flow containing a soft sphere, and swimmers actuated via active stress.
The elastohydrodynamics of slender bodies in a viscous fluid have long been the source of theoretical investigation, being pertinent to the microscale world of ciliates and flagellates as well as to biological and engineered active matter more generally. Though recent works have overcome the severe numerical stiffness typically associated with slender elastohydrodynamics, employing both local and non-local couplings to the surrounding fluid, there is no framework of comparable efficiency that rigorously justifies its hydrodynamic accuracy. In this study, we combine developments in filament elastohydrodynamics with a recent slender-body theory, affording algebraic asymptotic accuracy to the commonly imposed no-slip condition on the surface of a slender filament of potentially non-uniform cross-sectional radius. Further, we do this whilst retaining the remarkable practical efficiency of contemporary elastohydrodynamic approaches, having drawn inspiration from the method of regularised Stokeslet segments to yield an efficient and flexible slender-body theory of regularised non-uniform segments.
We present the first time-resolved measurements of the oscillatory velocity field induced by swimming unicellular microorganisms. Confinement of the green alga C. reinhardtii in stabilized thin liquid films allows simultaneous tracking of cells and tracer particles. The measured velocity field reveals complex time-dependent flow structures, and scales inversely with distance. The instantaneous mechanical power generated by the cells is measured from the velocity fields and peaks at 15 fW. The dissipation per cycle is more than four times what steady swimming would require.
We perform molecular dynamics simulations to understand the translational and rotational diffusion of Janus nanoparticles at the interface between two immiscible fluids. Considering spherical particles with different affinity to fluid phases, both their dynamics as well as the fluid structure around them are evaluated as a function of particle size, amphiphilicity, fluid density, and interfacial tension. We show that as the particle amphiphilicity increases due to enhanced wetting of each side with its favorite fluid, the rotational thermal motion decreases. Moreover, the in-plane diffusion of nanoparticles at the interface becomes slower for more amphiphilic particles, mainly due to formation of a denser adsorption layer. The particles induce an ordered structure in the surrounding fluid that becomes more pronounced for highly amphiphilic nanoparticles, leading to increased resistance against nanoparticle motion. A similar phenomenon is observed for homogeneous particles diffusing in bulk upon increasing their wettability. Our findings can provide fundamental insight into the dynamics of drugs and protein molecules with anisotropic surface properties at biological interfaces including cell membranes.
The Stokes equation describes the motion of fluids when inertial forces are negligible compared to viscous forces. In this article, we explore the consequence of parity-violating and non-dissipative (i.e. odd) viscosities on Stokes flows. Parity violating viscosities are coefficients of the viscosity tensor that are not invariant under mirror reflections of space, while odd viscosities are those which do not contribute to dissipation of mechanical energy. These viscosities can occur in systems ranging from synthetic and biological active fluids to magnetised and rotating fluids, in which parity (i.e. mirror reflection) symmetry is broken. We first systematically enumerate all possible parity-violating viscosities compatible with cylindrical symmetry, highlighting their connection to potential microscopic realizations. Then, using a combination of analytical and numerical methods, we analyze the effects of the parity violating viscosities on the Stokeslet solution, flow past a sphere or a bubble, and many-particle sedimentation. In all the cases we analyze parity violating viscosities give rise to an azimuthal flow even when the driving force is along the axis of cylindrical symmetry. For a few sedimenting particles, the azimuthal flow bends the trajectories compared to a traditional Stokes flow. For a cloud of particles, the azimuthal flow impedes the transformation into a torus and the subsequent breakup into smaller parts that would otherwise occur. The presence of azimuthal flows in cylindrically symmetric systems (sphere, bubble, cloud of particles) can serve as a probe for parity-violating viscosities in experimental systems.
comments
Fetching comments Fetching comments
Sign in to be able to follow your search criteria
mircosoft-partner

هل ترغب بارسال اشعارات عن اخر التحديثات في شمرا-اكاديميا