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Register a new userLong troughs in the Lyman-$alpha$ forest below redshift 6 due to islands of neutral hydrogen
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A long (110 cMpc/$h$) and deep absorption trough in the Ly$alpha$ forest has been observed extending down to redshift 5.5 in the spectrum of ULAS J0148+0600. Although no Ly$alpha$ transmission is detected, Ly$beta$ spikes are present which has led to claims that the gas along this trough must be ionized. Using high resolution cosmological radiative transfer simulations in large volumes, we show that in a scenario where reionization ends late ($z sim 5.2$), our simulations can reproduce troughs as long as observed. In this model, we find that the troughs are caused by islands of neutral hydrogen. Small ionized holes within the neutral islands allow for the transmission of Ly$beta$. We have also modelled the Ly$alpha$ emitter population around the simulated troughs, and show that there is a deficit of Ly$alpha$ emitters close to the trough as is observed.
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The latest measurements of CMB electron scattering optical depth reported by Planck significantly reduces the allowed space of HI reionization models, pointing toward a later ending and/or less extended phase transition than previously believed. Reionization impulsively heats the intergalactic medium (IGM) to $sim10^4$ K, and owing to long cooling and dynamical times in the diffuse gas, comparable to the Hubble time, memory of reionization heating is retained. Therefore, a late ending reionization has significant implications for the structure of the $zsim5-6$ Lyman-$alpha$ (ly$alpha$) forest. Using state-of-the-art hydrodynamical simulations that allow us to vary the timing of reionization and its associated heat injection, we argue that extant thermal signatures from reionization can be detected via the Ly$alpha$ forest power spectrum at $5< z<6$. This arises because the small-scale cutoff in the power depends not only the the IGM temperature at these epochs, but is also particularly sensitive to the pressure smoothing scale set by the IGM full thermal history. Comparing our different reionization models with existing measurements of the Ly$alpha$ forest flux power spectrum at $z=5.0-5.4$, we find that models satisfying Plancks $tau_e$, constraint favor a moderate amount of heat injection consistent with galaxies driving reionization, but disfavoring quasar-driven scenarios. We explore the impact of different reionization histories and heating models on the shape of the power spectrum, and find that they can produce similar effects, but argue that this degeneracy can be broken with high enough quality data. We study the feasibility of measuring the flux power spectrum at $zsimeq 6$ using mock quasar spectra and conclude that a sample of $sim10$ high-resolution spectra with an attainable signal-to-noise ratio will allow distinguishing between different reionization scenarios.
Recent observations of the Lyman-alpha forest show large-scale spatial variations in the intergalactic Lyman-alpha opacity that grow rapidly with redshift at z>5, far in excess of expectations from empirically motivated models. Previous studies have attempted to explain this excess with spatial fluctuations in the ionizing background, but found that this required either extremely rare sources or problematically low values for the mean free path of ionizing photons. Here we report that much -- or potentially all -- of the observed excess likely arises from residual spatial variations in temperature that are an inevitable byproduct of a patchy and extended reionization process. The amplitude of opacity fluctuations generated in this way depends on the timing and duration of reionization. If the entire excess is due to temperature variations alone, the observed fluctuation amplitude favors a late-ending but extended reionization process that was roughly half complete by z~9 and that ended at z~6. In this scenario, the highest opacities occur in regions that reionized earliest, since they have had the most time to cool, while the lowest opacities occur in the warmer regions that reionized most recently. This correspondence potentially opens a new observational window into patchy reionization.
We investigate the large-scale structure of Lyman-alpha emission intensity in the Universe at redshifts z=2-3.5 using cross-correlation techniques. Our Lya emission samples are spectra of BOSS Luminous Red Galaxies from Data Release 12 with the best fit model galaxies subtracted. We cross-correlate the residual flux in these spectra with BOSS quasars, and detect a positive signal on scales 1-15 Mpc/h. We identify and remove a source of contamination not previously accounted for, due to the effects of quasar clustering on cross-fibre light. Corrected, our quasar-Lya emission cross-correlation is 50 % lower than that seen by Croft et al. for DR10, but still significant. Because only 3% of space is within 15 Mpc/h of a quasar, the result does not fully explore the global large-scale structure of Lya emission. To do this, we cross-correlate with the Lya forest. We find no signal in this case. The 95% upper limit on the global Lya mean surface brightness from Lya emission-Lya forest cross-correlation is mu < 1.2x10^-22 erg/s/cm^2/A/arcsec^2 This null result rules out the scenario where the observed quasar-Lya emission cross-correlation is primarily due to the large scale structure of star forming galaxies, Taken in combination, our results suggest that Lya emitting galaxies contribute, but quasars dominate within 15 Mpc/h. A simple model for Lya emission from quasars based on hydrodynamic simulations reproduces both the observed forest-Lya emission and quasar-Lya emission signals. The latter is also consistent with extrapolation of observations of fluorescent emission from smaller scales r < 1 Mpc.
High-redshift QSO spectra show large spatial fluctuations in the Ly-alpha opacity of the intergalactic medium on surprisingly large scales at z>~5.5. We present a radiative transfer simulation of cosmic reionization driven by galaxies that reproduces this large scatter and the rapid evolution of the Ly-alpha opacity distribution at 5<z<6. The simulation also reproduces the low Thomson scattering optical depth reported by the latest CMB measurement and is consistent with the observed short near-zones and strong red damping wings in the highest-redshift QSOs. It also matches the rapid disappearance of observed Ly-alpha emission by galaxies at z>~6. Reionization is complete at z=5.3 in our model, and 50% of the volume of the Universe is ionized at z=7. Agreement with the Ly-alpha forest data in such a late reionization model requires a rapid evolution of the ionizing emissivity of galaxies that peaks at z~6.8. The late end of reionization results in a large scatter in the photoionisation rate and the neutral hydrogen fraction at redshifts as low as z<~5.5 with large residual neutral islands that can produce very long Gunn-Peterson troughs resembling those seen in the data.
With recent Lyman-alpha forest data from BOSS and XQ-100, some studies suggested that the lower mass limit on the fuzzy dark matter (FDM) particles is lifted up to $10^{-21},mathrm{eV}$. However, such a limit was obtained by $Lambda$CDM simulations with the FDM initial condition and the quantum pressure (QP) was not taken into account which could have generated non-trivial effects in large scales structures. We investigate the QP effects in cosmological simulations systematically, and find that the QP leads to further suppression of the matter power spectrum at small scales, as well as the halo mass function in the low mass end. We estimate the suppressing effect of QP in the 1D flux power spectrum of Lyman-alpha forest and compare it with data from BOSS and XQ-100. The rough uncertainties of thermal gas properties in the flux power spectrum model calculation were discussed. We conclude that more systematic studies, especially with QP taken into account, are necessary to constrain FDM particle mass using Lyman-alpha forest.
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