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Register a new userPPGnet: Deep Network for Device Independent Heart Rate Estimation from Photoplethysmogram
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Photoplethysmogram (PPG) is increasingly used to provide monitoring of the cardiovascular system under ambulatory conditions. Wearable devices like smartwatches use PPG to allow long term unobtrusive monitoring of heart rate in free living conditions. PPG based heart rate measurement is unfortunately highly susceptible to motion artifacts, particularly when measured from the wrist. Traditional machine learning and deep learning approaches rely on tri-axial accelerometer data along with PPG to perform heart rate estimation. The conventional learning based approaches have not addressed the need for device-specific modeling due to differences in hardware design among PPG devices. In this paper, we propose a novel end to end deep learning model to perform heart rate estimation using 8 second length input PPG signal. We evaluate the proposed model on the IEEE SPC 2015 dataset, achieving a mean absolute error of 3.36+-4.1BPM for HR estimation on 12 subjects without requiring patient specific training. We also studied the feasibility of applying transfer learning along with sparse retraining from a comprehensive in house PPG dataset for heart rate estimation across PPG devices with different hardware design.
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Extracting the instantaneous heart rate (iHR) from face videos has been well studied in recent years. It is well known that changes in skin color due to blood flow can be captured using conventional cameras. One of the main limitations of methods that rely on this principle is the need of an illumination source. Moreover, they have to be able to operate under different light conditions. One way to avoid these constraints is using infrared cameras, allowing the monitoring of iHR under low light conditions. In this work, we present a simple, principled signal extraction method that recovers the iHR from infrared face videos. We tested the procedure on 7 participants, for whom we recorded an electrocardiogram simultaneously with their infrared face video. We checked that the recovered signal matched the ground truth iHR, showing that infrared is a promising alternative to conventional video imaging for heart rate monitoring, especially in low light conditions. Code is available at https://github.com/natalialmg/IR_iHR
Continuous monitoring of cardiac health under free living condition is crucial to provide effective care for patients undergoing post operative recovery and individuals with high cardiac risk like the elderly. Capacitive Electrocardiogram (cECG) is one such technology which allows comfortable and long term monitoring through its ability to measure biopotential in conditions without having skin contact. cECG monitoring can be done using many household objects like chairs, beds and even car seats allowing for seamless monitoring of individuals. This method is unfortunately highly susceptible to motion artifacts which greatly limits its usage in clinical practice. The current use of cECG systems has been limited to performing rhythmic analysis. In this paper we propose a novel end-to-end deep learning architecture to perform the task of denoising capacitive ECG. The proposed network is trained using motion corrupted three channel cECG and a reference LEAD I ECG collected on individuals while driving a car. Further, we also propose a novel joint loss function to apply loss on both signal and frequency domain. We conduct extensive rhythmic analysis on the model predictions and the ground truth. We further evaluate the signal denoising using Mean Square Error(MSE) and Cross Correlation between model predictions and ground truth. We report MSE of 0.167 and Cross Correlation of 0.476. The reported results highlight the feasibility of performing morphological analysis using the filtered cECG. The proposed approach can allow for continuous and comprehensive monitoring of the individuals in free living conditions.
Continuous, ubiquitous monitoring through wearable sensors has the potential to collect useful information about users context. Heart rate is an important physiologic measure used in a wide variety of applications, such as fitness tracking and health monitoring. However, wearable sensors that monitor heart rate, such as smartwatches and electrocardiogram (ECG) patches, can have gaps in their data streams because of technical issues (e.g., bad wireless channels, battery depletion, etc.) or user-related reasons (e.g. motion artifacts, user compliance, etc.). The ability to use other available sensor data (e.g., smartphone data) to estimate missing heart rate readings is useful to cope with any such gaps, thus improving data quality and continuity. In this paper, we test the feasibility of estimating raw heart rate using smartphone sensor data. Using data generated by 12 participants in a one-week study period, we were able to build both personalized and generalized models using regression, SVM, and random forest algorithms. All three algorithms outperformed the baseline moving-average interpolation method for both personalized and generalized settings. Moreover, our findings suggest that personalized models outperformed the generalized models, which speaks to the importance of considering personal physiology, behavior, and life style in the estimation of heart rate. The promising results provide preliminary evidence of the feasibility of combining smartphone sensor data with wearable sensor data for continuous heart rate monitoring.
Classifying limb movements using brain activity is an important task in Brain-computer Interfaces (BCI) that has been successfully used in multiple application domains, ranging from human-computer interaction to medical and biomedical applications. This paper proposes a novel solution for classification of left/right hand movement by exploiting a Long Short-Term Memory (LSTM) network with attention mechanism to learn the electroencephalogram (EEG) time-series information. To this end, a wide range of time and frequency domain features are extracted from the EEG signals and used to train an LSTM network to perform the classification task. We conduct extensive experiments with the EEG Movement dataset and show that our proposed solution our method achieves improvements over several benchmarks and state-of-the-art methods in both intra-subject and cross-subject validation schemes. Moreover, we utilize the proposed framework to analyze the information as received by the sensors and monitor the activated regions of the brain by tracking EEG topography throughout the experiments.
Most of the two-dimensional (2D) hydraulic/hydrodynamic models are still computationally too demanding for real-time applications. In this paper, an innovative modelling approach based on a deep convolutional neural network (CNN) method is presented for rapid prediction of fluvial flood inundation. The CNN model is trained using outputs from a 2D hydraulic model (i.e. LISFLOOD-FP) to predict water depths. The pre-trained model is then applied to simulate the January 2005 and December 2015 floods in Carlisle, UK. The CNN predictions are compared favourably with the outputs produced by LISFLOOD-FP. The performance of the CNN model is further confirmed by benchmarking against a support vector regression (SVR) method. The results show that the CNN model outperforms SVR by a large margin. The CNN model is highly accurate in capturing flooded cells as indicated by several quantitative assessment matrices. The estimated error for reproducing maximum flood depth is 0 ~ 0.2 meters for the 2005 event and 0 ~ 0.5 meters for the 2015 event at over 99% of the cells covering the computational domain. The proposed CNN method offers great potential for real-time flood modelling/forecasting considering its simplicity, superior performance and computational efficiency.
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