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Register a new userSinogram interpolation for sparse-view micro-CT with deep learning neural network
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In sparse-view Computed Tomography (CT), only a small number of projection images are taken around the object, and sinogram interpolation method has a significant impact on final image quality. When the amount of sparsity (the amount of missing views in sinogram data) is not high, conventional interpolation methods have yielded good results. When the amount of sparsity is high, more advanced sinogram interpolation methods are needed. Recently, several deep learning (DL) based sinogram interpolation methods have been proposed. However, those DL-based methods have mostly tested so far on computer simulated sinogram data rather experimentally acquired sinogram data. In this study, we developed a sinogram interpolation method for sparse-view micro-CT based on the combination of U-Net and residual learning. We applied the method to sinogram data obtained from sparse-view micro-CT experiments, where the sparsity reached 90%. The interpolated sinogram by the DL neural network was fed to FBP algorithm for reconstruction. The result shows that both RMSE and SSIM of CT image are greatly improved. The experimental results demonstrate that this sinogram interpolation method produce significantly better results over standard linear interpolation methods when the sinogram data are extremely sparse.
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While micro-CT systems are instrumental in preclinical research, clinical micro-CT imaging has long been desired with cochlear implantation as a primary example. The structural details of the cochlear implant and the temporal bone require a significantly higher image resolution than that (about 0.2 mm) provided by current medical CT scanners. In this paper, we propose a clinical micro-CT (CMCT) system design integrating conventional spiral cone-beam CT, contemporary interior tomography, deep learning techniques, and technologies of micro-focus X-ray source, photon-counting detector (PCD), and robotic arms for ultrahigh resolution localized tomography of a freely-selected volume of interest (VOI) at a minimized radiation dose level. The whole system consists of a standard CT scanner for a clinical CT exam and VOI specification, and a robotic-arm based micro-CT scanner for a local scan at much higher spatial and spectral resolution as well as much reduced radiation dose. The prior information from global scan is also fully utilized for background compensation to improve interior tomography from local data for accurate and stable VOI reconstruction. Our results and analysis show that the proposed hybrid reconstruction algorithm delivers superior local reconstruction, being insensitive to the misalignment of the isocenter position and initial view angle in the data/image registration while the attenuation error caused by scale mismatch can be effectively addressed with bias correction. These findings demonstrate the feasibility of our system design. We envision that deep learning techniques can be leveraged for optimized imaging performance. With high resolution imaging, high dose efficiency and low system cost synergistically, our proposed CMCT system has great potentials in temporal bone imaging as well as various other clinical applications.
We suggest representing light field (LF) videos as one-off neural networks (NN), i.e., a learned mapping from view-plus-time coordinates to high-resolution color values, trained on sparse views. Initially, this sounds like a bad idea for three main reasons: First, a NN LF will likely have less quality than a same-sized pixel basis representation. Second, only few training data, e.g., 9 exemplars per frame are available for sparse LF videos. Third, there is no generalization across LFs, but across view and time instead. Consequently, a network needs to be trained for each LF video. Surprisingly, these problems can turn into substantial advantages: Other than the linear pixel basis, a NN has to come up with a compact, non-linear i.e., more intelligent, explanation of color, conditioned on the sparse view and time coordinates. As observed for many NN however, this representation now is interpolatable: if the image output for sparse view coordinates is plausible, it is for all intermediate, continuous coordinates as well. Our specific network architecture involves a differentiable occlusion-aware warping step, which leads to a compact set of trainable parameters and consequently fast learning and fast execution.
A fundamental problem in X-ray Computed Tomography (CT) is the scatter due to interaction of photons with the imaged object. Unless corrected, scatter manifests itself as degradations in the reconstructions in the form of various artifacts. Scatter correction is therefore critical for reconstruction quality. Scatter correction methods can be divided into two categories: hardware-based; and software-based. Despite success in specific settings, hardware-based methods require modification in the hardware, or increase in the scan time or dose. This makes software-based methods attractive. In this context, Monte-Carlo based scatter estimation, analytical-numerical, and kernel-based methods were developed. Furthermore, data-driven approaches to tackle this problem were recently demonstrated. In this work, two novel physics-inspired deep-learning-based methods, PhILSCAT and OV-PhILSCAT, are proposed. The methods estimate and correct for the scatter in the acquired projection measurements. They incorporate both an initial reconstruction of the object of interest and the scatter-corrupted measurements related to it. They use a common deep neural network architecture and cost function, both tailored to the problem. Numerical experiments with data obtained by Monte-Carlo simulations of the imaging of phantoms reveal significant improvement over a recent purely projection-domain deep neural network scatter correction method.
Computed tomography (CT) has been widely used for medical diagnosis, assessment, and therapy planning and guidance. In reality, CT images may be affected adversely in the presence of metallic objects, which could lead to severe metal artifacts and influence clinical diagnosis or dose calculation in radiation therapy. In this paper, we propose a generalizable framework for metal artifact reduction (MAR) by simultaneously leveraging the advantages of image domain and sinogram domain-based MAR techniques. We formulate our framework as a sinogram completion problem and train a neural network (SinoNet) to restore the metal-affected projections. To improve the continuity of the completed projections at the boundary of metal trace and thus alleviate new artifacts in the reconstructed CT images, we train another neural network (PriorNet) to generate a good prior image to guide sinogram learning, and further design a novel residual sinogram learning strategy to effectively utilize the prior image information for better sinogram completion. The two networks are jointly trained in an end-to-end fashion with a differentiable forward projection (FP) operation so that the prior image generation and deep sinogram completion procedures can benefit from each other. Finally, the artifact-reduced CT images are reconstructed using the filtered backward projection (FBP) from the completed sinogram. Extensive experiments on simulated and real artifacts data demonstrate that our method produces superior artifact-reduced results while preserving the anatomical structures and outperforms other MAR methods.
X-ray Computed Tomography (CT) is widely used in clinical applications such as diagnosis and image-guided interventions. In this paper, we propose a new deep learning based model for CT image reconstruction with the backbone network architecture built by unrolling an iterative algorithm. However, unlike the existing strategy to include as many data-adaptive components in the unrolled dynamics model as possible, we find that it is enough to only learn the parts where traditional designs mostly rely on intuitions and experience. More specifically, we propose to learn an initializer for the conjugate gradient (CG) algorithm that involved in one of the subproblems of the backbone model. Other components, such as image priors and hyperparameters, are kept as the original design. Since a hypernetwork is introduced to inference on the initialization of the CG module, it makes the proposed model a certain meta-learning model. Therefore, we shall call the proposed model the meta-inversion network (MetaInv-Net). The proposed MetaInv-Net can be designed with much less trainable parameters while still preserves its superior image reconstruction performance than some state-of-the-art deep models in CT imaging. In simulated and real data experiments, MetaInv-Net performs very well and can be generalized beyond the training setting, i.e., to other scanning settings, noise levels, and data sets.
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