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Register a new userMetaInv-Net: Meta Inversion Network for Sparse View CT Image Reconstruction
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X-ray Computed Tomography (CT) is widely used in clinical applications such as diagnosis and image-guided interventions. In this paper, we propose a new deep learning based model for CT image reconstruction with the backbone network architecture built by unrolling an iterative algorithm. However, unlike the existing strategy to include as many data-adaptive components in the unrolled dynamics model as possible, we find that it is enough to only learn the parts where traditional designs mostly rely on intuitions and experience. More specifically, we propose to learn an initializer for the conjugate gradient (CG) algorithm that involved in one of the subproblems of the backbone model. Other components, such as image priors and hyperparameters, are kept as the original design. Since a hypernetwork is introduced to inference on the initialization of the CG module, it makes the proposed model a certain meta-learning model. Therefore, we shall call the proposed model the meta-inversion network (MetaInv-Net). The proposed MetaInv-Net can be designed with much less trainable parameters while still preserves its superior image reconstruction performance than some state-of-the-art deep models in CT imaging. In simulated and real data experiments, MetaInv-Net performs very well and can be generalized beyond the training setting, i.e., to other scanning settings, noise levels, and data sets.
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Breast CT provides image volumes with isotropic resolution in high contrast, enabling detection of small calcification (down to a few hundred microns in size) and subtle density differences. Since breast is sensitive to x-ray radiation, dose reduction of breast CT is an important topic, and for this purpose, few-view scanning is a main approach. In this article, we propose a Deep Efficient End-to-end Reconstruction (DEER) network for few-view breast CT image reconstruction. The major merits of our network include high dose efficiency, excellent image quality, and low model complexity. By the design, the proposed network can learn the reconstruction process with as few as O(N) parameters, where N is the side length of an image to be reconstructed, which represents orders of magnitude improvements relative to the state-of-the-art deep-learning-based reconstruction methods that map raw data to tomographic images directly. Also, validated on a cone-beam breast CT dataset prepared by Koning Corporation on a commercial scanner, our method demonstrates a competitive performance over the state-of-the-art reconstruction networks in terms of image quality. The source code of this paper is available at: https://github.com/HuidongXie/DEER.
Inverse problems spanning four or more dimensions such as space, time and other independent parameters have become increasingly important. State-of-the-art 4D reconstruction methods use model based iterative reconstruction (MBIR), but depend critically on the quality of the prior modeling. Recently, plug-and-play (PnP) methods have been shown to be an effective way to incorporate advanced prior models using state-of-the-art denoising algorithms. However, state-of-the-art denoisers such as BM4D and deep convolutional neural networks (CNNs) are primarily available for 2D or 3D images and extending them to higher dimensions is difficult due to algorithmic complexity and the increased difficulty of effective training. In this paper, we present multi-slice fusion, a novel algorithm for 4D reconstruction, based on the fusion of multiple low-dimensional denoisers. Our approach uses multi-agent consensus equilibrium (MACE), an extension of plug-and-play, as a framework for integrating the multiple lower-dimensional models. We apply our method to 4D cone-beam X-ray CT reconstruction for non destructive evaluation (NDE) of samples that are dynamically moving during acquisition. We implement multi-slice fusion on distributed, heterogeneous clusters in order to reconstruct large 4D volumes in reasonable time and demonstrate the inherent parallelizable nature of the algorithm. We present simulated and real experimental results on sparse-view and limited-angle CT data to demonstrate that multi-slice fusion can substantially improve the quality of reconstructions relative to traditional methods, while also being practical to implement and train.
This paper applies the recent fast iterative neural network framework, Momentum-Net, using appropriate models to low-dose X-ray computed tomography (LDCT) image reconstruction. At each layer of the proposed Momentum-Net, the model-based image reconstruction module solves the majorized penalized weighted least-square problem, and the image refining module uses a four-layer convolutional neural network (CNN). Experimental results with the NIH AAPM-Mayo Clinic Low Dose CT Grand Challenge dataset show that the proposed Momentum-Net architecture significantly improves image reconstruction accuracy, compared to a state-of-the-art noniterative image denoising deep neural network (NN), WavResNet (in LDCT). We also investigated the spectral normalization technique that applies to image refining NN learning to satisfy the nonexpansive NN property; however, experimental results show that this does not improve the image reconstruction performance of Momentum-Net.
The novel corona-virus disease (COVID-19) pandemic has caused a major outbreak in more than 200 countries around the world, leading to a severe impact on the health and life of many people globally. As of Aug 25th of 2020, more than 20 million people are infected, and more than 800,000 death are reported. Computed Tomography (CT) images can be used as a as an alternative to the time-consuming reverse transcription polymerase chain reaction (RT-PCR) test, to detect COVID-19. In this work we developed a deep learning framework to predict COVID-19 from CT images. We propose to use an attentional convolution network, which can focus on the infected areas of chest, enabling it to perform a more accurate prediction. We trained our model on a dataset of more than 2000 CT images, and report its performance in terms of various popular metrics, such as sensitivity, specificity, area under the curve, and also precision-recall curve, and achieve very promising results. We also provide a visualization of the attention maps of the model for several test images, and show that our model is attending to the infected regions as intended. In addition to developing a machine learning modeling framework, we also provide the manual annotation of the potentionally infected regions of chest, with the help of a board-certified radiologist, and make that publicly available for other researchers.
X-ray computed tomography (CT) is widely used in clinical practice. The involved ionizing X-ray radiation, however, could increase cancer risk. Hence, the reduction of the radiation dose has been an important topic in recent years. Few-view CT image reconstruction is one of the main ways to minimize radiation dose and potentially allow a stationary CT architecture. In this paper, we propose a deep encoder-decoder adversarial reconstruction (DEAR) network for 3D CT image reconstruction from few-view data. Since the artifacts caused by few-view reconstruction appear in 3D instead of 2D geometry, a 3D deep network has a great potential for improving the image quality in a data-driven fashion. More specifically, our proposed DEAR-3D network aims at reconstructing 3D volume directly from clinical 3D spiral cone-beam image data. DEAR is validated on a publicly available abdominal CT dataset prepared and authorized by Mayo Clinic. Compared with other 2D deep-learning methods, the proposed DEAR-3D network can utilize 3D information to produce promising reconstruction results.
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