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Register a new userInformation-theoretic and algorithmic thresholds for group testing
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Added by
Oliver Gebhard
Publication date
2019
fields
Informatics Engineering
and research's language is
English
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In the group testing problem we aim to identify a small number of infected individuals within a large population. We avail ourselves to a procedure that can test a group of multiple individuals, with the test result coming out positive iff at least one individual in the group is infected. With all tests conducted in parallel, what is the least number of tests required to identify the status of all individuals? In a recent test design [Aldridge et al. 2016] the individuals are assigned to test groups randomly, with every individual joining an equal number of groups. We pinpoint the sharp threshold for the number of tests required in this randomised design so that it is information-theoretically possible to infer the infection status of every individual. Moreover, we analyse two efficient inference algorithms. These results settle conjectures from [Aldridge et al. 2014, Johnson et al. 2019].
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Let $X_i, i in V$ form a Markov random field (MRF) represented by an undirected graph $G = (V,E)$, and $V$ be a subset of $V$. We determine the smallest graph that can always represent the subfield $X_i, i in V$ as an MRF. Based on this result, we obtain a necessary and sufficient condition for a subfield of a Markov tree to be also a Markov tree. When $G$ is a path so that $X_i, i in V$ form a Markov chain, it is known that the $I$-Measure is always nonnegative and the information diagram assumes a very special structure Kawabata and Yeung (1992). We prove that Markov chain is essentially the only MRF such that the $I$-Measure is always nonnegative. By applying our characterization of the smallest graph representation of a subfield of an MRF, we develop a recursive approach for constructing information diagrams for MRFs. Our work is built on the set-theoretic characterization of an MRF in Yeung, Lee, and Ye (2002).
Vindicating a sophisticated but non-rigorous physics approach called the cavity method, we establish a formula for the mutual information in statistical inference problems induced by random graphs and we show that the mutual information holds the key to understanding certain important phase transitions in random graph models. We work out several concrete applications of these general results. For instance, we pinpoint the exact condensation phase transition in the Potts antiferromagnet on the random graph, thereby improving prior approximate results [Contucci et al.: Communications in Mathematical Physics 2013]. Further, we prove the conjecture from [Krzakala et al.: PNAS 2007] about the condensation phase transition in the random graph coloring problem for any number $qgeq3$ of colors. Moreover, we prove the conjecture on the information-theoretic threshold in the disassortative stochastic block model [Decelle et al.: Phys. Rev. E 2011]. Additionally, our general result implies the conjectured formula for the mutual information in Low-Density Generator Matrix codes [Montanari: IEEE Transactions on Information Theory 2005].
In the group testing problem the aim is to identify a small set of $ksim n^theta$ infected individuals out of a population size $n$, $0<theta<1$. We avail ourselves of a test procedure capable of testing groups of individuals, with the test returning a positive result iff at least one individual in the group is infected. The aim is to devise a test design with as few tests as possible so that the set of infected individuals can be identified correctly with high probability. We establish an explicit sharp information-theoretic/algorithmic phase transition $minf$ for non-adaptive group testing, where all tests are conducted in parallel. Thus, with more than $minf$ tests the infected individuals can be identified in polynomial time whp, while learning the set of infected individuals is information-theoretically impossible with fewer tests. In addition, we develop an optimal adaptive scheme where the tests are conducted in two stages.
Pimentel et al. (2020) recently analysed probing from an information-theoretic perspective. They argue that probing should be seen as approximating a mutual information. This led to the rather unintuitive conclusion that representations encode exactly the same information about a target task as the original sentences. The mutual information, however, assumes the true probability distribution of a pair of random variables is known, leading to unintuitive results in settings where it is not. This paper proposes a new framework to measure what we term Bayesian mutual information, which analyses information from the perspective of Bayesian agents -- allowing for more intuitive findings in scenarios with finite data. For instance, under Bayesian MI we have that data can add information, processing can help, and information can hurt, which makes it more intuitive for machine learning applications. Finally, we apply our framework to probing where we believe Bayesian mutual information naturally operationalises ease of extraction by explicitly limiting the available background knowledge to solve a task.
The main contribution of this paper is to design an Information Retrieval (IR) technique based on Algorithmic Information Theory (using the Normalized Compression Distance- NCD), statistical techniques (outliers), and novel organization of data base structure. The paper shows how they can be integrated to retrieve information from generic databases using long (text-based) queries. Two important problems are analyzed in the paper. On the one hand, how to detect false positives when the distance among the documents is very low and there is actual similarity. On the other hand, we propose a way to structure a document database which similarities distance estimation depends on the length of the selected text. Finally, the experimental evaluations that have been carried out to study previous problems are shown.
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