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Register a new userRobust Learning at Noisy Labeled Medical Images: Applied to Skin Lesion Classification
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Added by
Cheng Xue
Publication date
2019
fields
Informatics Engineering
and research's language is
English
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Deep neural networks (DNNs) have achieved great success in a wide variety of medical image analysis tasks. However, these achievements indispensably rely on the accurately-annotated datasets. If with the noisy-labeled images, the training procedure will immediately encounter difficulties, leading to a suboptimal classifier. This problem is even more crucial in the medical field, given that the annotation quality requires great expertise. In this paper, we propose an effective iterative learning framework for noisy-labeled medical image classification, to combat the lacking of high quality annotated medical data. Specifically, an online uncertainty sample mining method is proposed to eliminate the disturbance from noisy-labeled images. Next, we design a sample re-weighting strategy to preserve the usefulness of correctly-labeled hard samples. Our proposed method is validated on skin lesion classification task, and achieved very promising results.
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Skin cancer is one of the most common cancers in the United States. As technological advancements are made, algorithmic diagnosis of skin lesions is becoming more important. In this paper, we develop algorithms for segmenting the actual diseased area of skin in a given image of a skin lesion, and for classifying different types of skin lesions pictured in a given image. The cores of the algorithms used were based in persistent homology, an algebraic topology technique that is part of the rising field of Topological Data Analysis (TDA). The segmentation algorithm utilizes a similar concept to persistent homology that captures the robustness of segmented regions. For classification, we design two families of topological features from persistence diagrams---which we refer to as {em persistence statistics} (PS) and {em persistence curves} (PC), and use linear support vector machine as classifiers. We also combined those topological features, PS and PC, into ResNet-101 model, which we call {em TopoResNet-101}, the results show that PS and PC are effective in two folds---improving classification performances and stabilizing the training process. Although convolutional features are the most important learning targets in CNN models, global information of images may be lost in the training process. Because topological features were extracted globally, our results show that the global property of topological features provide additional information to machine learning models.
In many real-world datasets, like WebVision, the performance of DNN based classifier is often limited by the noisy labeled data. To tackle this problem, some image related side information, such as captions and tags, often reveal underlying relationships across images. In this paper, we present an efficient weakly supervised learning by using a Side Information Network (SINet), which aims to effectively carry out a large scale classification with severely noisy labels. The proposed SINet consists of a visual prototype module and a noise weighting module. The visual prototype module is designed to generate a compact representation for each category by introducing the side information. The noise weighting module aims to estimate the correctness of each noisy image and produce a confidence score for image ranking during the training procedure. The propsed SINet can largely alleviate the negative impact of noisy image labels, and is beneficial to train a high performance CNN based classifier. Besides, we released a fine-grained product dataset called AliProducts, which contains more than 2.5 million noisy web images crawled from the internet by using queries generated from 50,000 fine-grained semantic classes. Extensive experiments on several popular benchmarks (i.e. Webvision, ImageNet and Clothing-1M) and our proposed AliProducts achieve state-of-the-art performance. The SINet has won the first place in the classification task on WebVision Challenge 2019, and outperformed other competitors by a large margin.
The classification accuracy of deep learning models depends not only on the size of their training sets, but also on the quality of their labels. In medical image classification, large-scale datasets are becoming abundant, but their labels will be noisy when they are automatically extracted from radiology reports using natural language processing tools. Given that deep learning models can easily overfit these noisy-label samples, it is important to study training approaches that can handle label noise. In this paper, we adapt a state-of-the-art (SOTA) noisy-label multi-class training approach to learn a multi-label classifier for the dataset Chest X-ray14, which is a large scale dataset known to contain label noise in the training set. Given that this dataset also has label noise in the testing set, we propose a new theoretically sound method to estimate the performance of the model on a hidden clean testing data, given the result on the noisy testing data. Using our clean data performance estimation, we notice that the majority of label noise on Chest X-ray14 is present in the class No Finding, which is intuitively correct because this is the most likely class to contain one or more of the 14 diseases due to labelling mistakes.
Deep convolutional neural networks have driven substantial advancements in the automatic understanding of images. Requiring a large collection of images and their associated annotations is one of the main bottlenecks limiting the adoption of deep networks. In the task of medical image segmentation, requiring pixel-level semantic annotations performed by human experts exacerbate this difficulty. This paper proposes a new framework to train a fully convolutional segmentation network from a large set of cheap unreliable annotations and a small set of expert-level clean annotations. We propose a spatially adaptive reweighting approach to treat clean and noisy pixel-level annotations commensurately in the loss function. We deploy a meta-learning approach to assign higher importance to pixels whose loss gradient direction is closer to those of clean data. Our experiments on training the network using segmentation ground truth corrupted with different levels of annotation noise show how spatial reweighting improves the robustness of deep networks to noisy annotations.
The semantic segmentation of skin lesions is an important and common initial task in the computer aided diagnosis of dermoscopic images. Although deep learning-based approaches have considerably improved the segmentation accuracy, there is still room for improvement by addressing the major challenges, such as variations in lesion shape, size, color and varying levels of contrast. In this work, we propose the first deep semantic segmentation framework for dermoscopic images which incorporates, along with the original RGB images, information extracted using the physics of skin illumination and imaging. In particular, we incorporate information from specific color bands, illumination invariant grayscale images, and shading-attenuated images. We evaluate our method on three datasets: the ISBI ISIC 2017 Skin Lesion Segmentation Challenge dataset, the DermoFit Image Library, and the PH2 dataset and observe improvements of 12.02%, 4.30%, and 8.86% respectively in the mean Jaccard index over a baseline model trained only with RGB images.
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