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Register a new userOn2Vec: Embedding-based Relation Prediction for Ontology Population
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Muhao Chen
Publication date
2018
fields
Informatics Engineering
and research's language is
English
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Populating ontology graphs represents a long-standing problem for the Semantic Web community. Recent advances in translation-based graph embedding methods for populating instance-level knowledge graphs lead to promising new approaching for the ontology population problem. However, unlike instance-level graphs, the majority of relation facts in ontology graphs come with comprehensive semantic relations, which often include the properties of transitivity and symmetry, as well as hierarchical relations. These comprehensive relations are often too complex for existing graph embedding methods, and direct application of such methods is not feasible. Hence, we propose On2Vec, a novel translation-based graph embedding method for ontology population. On2Vec integrates two model components that effectively characterize comprehensive relation facts in ontology graphs. The first is the Component-specific Model that encodes concepts and relations into low-dimensional embedding spaces without a loss of relational properties; the second is the Hierarchy Model that performs focused learning of hierarchical relation facts. Experiments on several well-known ontology graphs demonstrate the promising capabilities of On2Vec in predicting and verifying new relation facts. These promising results also make possible significant improvements in related methods.
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Biomedical researchers use ontologies to annotate their data with ontology terms, enabling better data integration and interoperability. However, the number, variety and complexity of current biomedical ontologies make it cumbersome for researchers to determine which ones to reuse for their specific needs. To overcome this problem, in 2010 the National Center for Biomedical Ontology (NCBO) released the Ontology Recommender, which is a service that receives a biomedical text corpus or a list of keywords and suggests ontologies appropriate for referencing the indicated terms. We developed a new version of the NCBO Ontology Recommender. Called Ontology Recommender 2.0, it uses a new recommendation approach that evaluates the relevance of an ontology to biomedical text data according to four criteria: (1) the extent to which the ontology covers the input data; (2) the acceptance of the ontology in the biomedical community; (3) the level of detail of the ontology classes that cover the input data; and (4) the specialization of the ontology to the domain of the input data. Our evaluation shows that the enhanced recommender provides higher quality suggestions than the original approach, providing better coverage of the input data, more detailed information about their concepts, increased specialization for the domain of the input data, and greater acceptance and use in the community. In addition, it provides users with more explanatory information, along with suggestions of not only individual ontologies but also groups of ontologies. It also can be customized to fit the needs of different scenarios. Ontology Recommender 2.0 combines the strengths of its predecessor with a range of adjustments and new features that improve its reliability and usefulness. Ontology Recommender 2.0 recommends over 500 biomedical ontologies from the NCBO BioPortal platform, where it is openly available.
Temporal set prediction is becoming increasingly important as many companies employ recommender systems in their online businesses, e.g., personalized purchase prediction of shopping baskets. While most previous techniques have focused on leveraging a users history, the study of combining it with others histories remains untapped potential. This paper proposes Global-Local Item Embedding (GLOIE) that learns to utilize the temporal properties of sets across whole users as well as within a user by coining the names as global and local information to distinguish the two temporal patterns. GLOIE uses Variational Autoencoder (VAE) and dynamic graph-based model to capture global and local information and then applies attention to integrate resulting item embeddings. Additionally, we propose to use Tweedie output for the decoder of VAE as it can easily model zero-inflated and long-tailed distribution, which is more suitable for several real-world data distributions than Gaussian or multinomial counterparts. When evaluated on three public benchmarks, our algorithm consistently outperforms previous state-of-the-art methods in most ranking metrics.
Neural embedding-based machine learning models have shown promise for predicting novel links in knowledge graphs. Unfortunately, their practical utility is diminished by their lack of interpretability. Recently, the fully interpretable, rule-based algorithm AnyBURL yielded highly competitive results on many general-purpose link prediction benchmarks. However, current approaches for aggregating predictions made by multiple rules are affected by redundancies. We improve upon AnyBURL by introducing the SAFRAN rule application framework, which uses a novel aggregation approach called Non-redundant Noisy-OR that detects and clusters redundant rules prior to aggregation. SAFRAN yields new state-of-the-art results for fully interpretable link prediction on the established general-purpose benchmarks FB15K-237, WN18RR and YAGO3-10. Furthermore, it exceeds the results of multiple established embedding-based algorithms on FB15K-237 and WN18RR and narrows the gap between rule-based and embedding-based algorithms on YAGO3-10.
The development of artificial general intelligence is considered by many to be inevitable. What such intelligence does after becoming aware is not so certain. To that end, research suggests that the likelihood of artificial general intelligence becoming hostile to humans is significant enough to warrant inquiry into methods to limit such potential. Thus, containment of artificial general intelligence is a timely and meaningful research topic. While there is limited research exploring possible containment strategies, such work is bounded by the underlying field the strategies draw upon. Accordingly, we set out to construct an ontology to describe necessary elements in any future containment technology. Using existing academic literature, we developed a single domain ontology containing five levels, 32 codes, and 32 associated descriptors. Further, we constructed ontology diagrams to demonstrate intended relationships. We then identified humans, AGI, and the cyber world as novel agent objects necessary for future containment activities. Collectively, the work addresses three critical gaps: (a) identifying and arranging fundamental constructs; (b) situating AGI containment within cyber science; and (c) developing scientific rigor within the field.
Measuring research impact and ranking academic achievement are important and challenging problems. Having an objective picture of research institution is particularly valuable for students, parents and funding agencies, and also attracts attention from government and industry. KDD Cup 2016 proposes the paper acceptance rank prediction task, in which the participants are asked to rank the importance of institutions based on predicting how many of their papers will be accepted at the 8 top conferences in computer science. In our work, we adopt a three-step feature engineering method, including basic features definition, finding similar conferences to enhance the feature set, and dimension reduction using PCA. We propose three ranking models and the ensemble methods for combining such models. Our experiment verifies the effectiveness of our approach. In KDD Cup 2016, we achieved the overall rank of the 2nd place.
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