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Register a new userAssessing fish abundance from underwater video using deep neural networks
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Added by
Ranju Mandal Dr.
Publication date
2018
fields
Informatics Engineering
and research's language is
English
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Uses of underwater videos to assess diversity and abundance of fish are being rapidly adopted by marine biologists. Manual processing of videos for quantification by human analysts is time and labour intensive. Automatic processing of videos can be employed to achieve the objectives in a cost and time-efficient way. The aim is to build an accurate and reliable fish detection and recognition system, which is important for an autonomous robotic platform. However, there are many challenges involved in this task (e.g. complex background, deformation, low resolution and light propagation). Recent advancement in the deep neural network has led to the development of object detection and recognition in real time scenarios. An end-to-end deep learning-based architecture is introduced which outperformed the state of the art methods and first of its kind on fish assessment task. A Region Proposal Network (RPN) introduced by an object detector termed as Faster R-CNN was combined with three classification networks for detection and recognition of fish species obtained from Remote Underwater Video Stations (RUVS). An accuracy of 82.4% (mAP) obtained from the experiments are much higher than previously proposed methods.
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Given a sufficiently large training dataset, it is relatively easy to train a modern convolution neural network (CNN) as a required image classifier. However, for the task of fish classification and/or fish detection, if a CNN was trained to detect or classify particular fish species in particular background habitats, the same CNN exhibits much lower accuracy when applied to new/unseen fish species and/or fish habitats. Therefore, in practice, the CNN needs to be continuously fine-tuned to improve its classification accuracy to handle new project-specific fish species or habitats. In this work we present a labelling-efficient method of training a CNN-based fish-detector (the Xception CNN was used as the base) on relatively small numbers (4,000) of project-domain underwater fish/no-fish images from 20 different habitats. Additionally, 17,000 of known negative (that is, missing fish) general-domain (VOC2012) above-water images were used. Two publicly available fish-domain datasets supplied additional 27,000 of above-water and underwater positive/fish images. By using this multi-domain collection of images, the trained Xception-based binary (fish/not-fish) classifier achieved 0.17% false-positives and 0.61% false-negatives on the projects 20,000 negative and 16,000 positive holdout test images, respectively. The area under the ROC curve (AUC) was 99.94%.
Evolutionary deep intelligence has recently shown great promise for producing small, powerful deep neural network models via the synthesis of increasingly efficient architectures over successive generations. Despite recent research showing the efficacy of multi-parent evolutionary synthesis, little has been done to directly assess architectural similarity between networks during the synthesis process for improved parent network selection. In this work, we present a preliminary study into quantifying architectural similarity via the percentage overlap of architectural clusters. Results show that networks synthesized using architectural alignment (via gene tagging) maintain higher architectural similarities within each generation, potentially restricting the search space of highly efficient network architectures.
Magnetic resonance imaging (MRI) has been proposed as a complimentary method to measure bone quality and assess fracture risk. However, manual segmentation of MR images of bone is time-consuming, limiting the use of MRI measurements in the clinical practice. The purpose of this paper is to present an automatic proximal femur segmentation method that is based on deep convolutional neural networks (CNNs). This study had institutional review board approval and written informed consent was obtained from all subjects. A dataset of volumetric structural MR images of the proximal femur from 86 subject were manually-segmented by an expert. We performed experiments by training two different CNN architectures with multiple number of initial feature maps and layers, and tested their segmentation performance against the gold standard of manual segmentations using four-fold cross-validation. Automatic segmentation of the proximal femur achieved a high dice similarity score of 0.94$pm$0.05 with precision = 0.95$pm$0.02, and recall = 0.94$pm$0.08 using a CNN architecture based on 3D convolution exceeding the performance of 2D CNNs. The high segmentation accuracy provided by CNNs has the potential to help bring the use of structural MRI measurements of bone quality into clinical practice for management of osteoporosis.
Visual analysis of complex fish habitats is an important step towards sustainable fisheries for human consumption and environmental protection. Deep Learning methods have shown great promise for scene analysis when trained on large-scale datasets. However, current datasets for fish analysis tend to focus on the classification task within constrained, plain environments which do not capture the complexity of underwater fish habitats. To address this limitation, we present DeepFish as a benchmark suite with a large-scale dataset to train and test methods for several computer vision tasks. The dataset consists of approximately 40 thousand images collected underwater from 20 green{habitats in the} marine-environments of tropical Australia. The dataset originally contained only classification labels. Thus, we collected point-level and segmentation labels to have a more comprehensive fish analysis benchmark. These labels enable models to learn to automatically monitor fish count, identify their locations, and estimate their sizes. Our experiments provide an in-depth analysis of the dataset characteristics, and the performance evaluation of several state-of-the-art approaches based on our benchmark. Although models pre-trained on ImageNet have successfully performed on this benchmark, there is still room for improvement. Therefore, this benchmark serves as a testbed to motivate further development in this challenging domain of underwater computer vision. Code is available at: https://github.com/alzayats/DeepFish
Despite having been studied to a great extent, the task of conditional generation of sequences of frames, or videos, remains extremely challenging. It is a common belief that a key step towards solving this task resides in modelling accurately both spatial and temporal information in video signals. A promising direction to do so has been to learn latent variable models that predict the future in latent space and project back to pixels, as suggested in recent literature. Following this line of work and building on top of a family of models introduced in prior work, Neural ODE, we investigate an approach that models time-continuous dynamics over a continuous latent space with a differential equation with respect to time. The intuition behind this approach is that these trajectories in latent space could then be extrapolated to generate video frames beyond the time steps for which the model is trained. We show that our approach yields promising results in the task of future frame prediction on the Moving MNIST dataset with 1 and 2 digits.
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