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Register a new userSample Efficient Semantic Segmentation using Rotation Equivariant Convolutional Networks
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Added by
Jasper Linmans
Publication date
2018
fields
Informatics Engineering
and research's language is
English
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We propose a semantic segmentation model that exploits rotation and reflection symmetries. We demonstrate significant gains in sample efficiency due to increased weight sharing, as well as improvements in robustness to symmetry transformations. The group equivariant CNN framework is extended for segmentation by introducing a new equivariant (G->Z2)-convolution that transforms feature maps on a group to planar feature maps. Also, equivariant transposed convolution is formulated for up-sampling in an encoder-decoder network. To demonstrate improvements in sample efficiency we evaluate on multiple data regimes of a rotation-equivariant segmentation task: cancer metastases detection in histopathology images. We further show the effectiveness of exploiting more symmetries by varying the size of the group.
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Magnetic resonance imaging (MRI) has been proposed as a complimentary method to measure bone quality and assess fracture risk. However, manual segmentation of MR images of bone is time-consuming, limiting the use of MRI measurements in the clinical practice. The purpose of this paper is to present an automatic proximal femur segmentation method that is based on deep convolutional neural networks (CNNs). This study had institutional review board approval and written informed consent was obtained from all subjects. A dataset of volumetric structural MR images of the proximal femur from 86 subject were manually-segmented by an expert. We performed experiments by training two different CNN architectures with multiple number of initial feature maps and layers, and tested their segmentation performance against the gold standard of manual segmentations using four-fold cross-validation. Automatic segmentation of the proximal femur achieved a high dice similarity score of 0.94$pm$0.05 with precision = 0.95$pm$0.02, and recall = 0.94$pm$0.08 using a CNN architecture based on 3D convolution exceeding the performance of 2D CNNs. The high segmentation accuracy provided by CNNs has the potential to help bring the use of structural MRI measurements of bone quality into clinical practice for management of osteoporosis.
We propose a new model for digital pathology segmentation, based on the observation that histopathology images are inherently symmetric under rotation and reflection. Utilizing recent findings on rotation equivariant CNNs, the proposed model leverages these symmetries in a principled manner. We present a visual analysis showing improved stability on predictions, and demonstrate that exploiting rotation equivariance significantly improves tumor detection performance on a challenging lymph node metastases dataset. We further present a novel derived dataset to enable principled comparison of machine learning models, in combination with an initial benchmark. Through this dataset, the task of histopathology diagnosis becomes accessible as a challenging benchmark for fundamental machine learning research.
Many automated processes such as auto-piloting rely on a good semantic segmentation as a critical component. To speed up performance, it is common to downsample the input frame. However, this comes at the cost of missed small objects and reduced accuracy at semantic boundaries. To address this problem, we propose a new content-adaptive downsampling technique that learns to favor sampling locations near semantic boundaries of target classes. Cost-performance analysis shows that our method consistently outperforms the uniform sampling improving balance between accuracy and computational efficiency. Our adaptive sampling gives segmentation with better quality of boundaries and more reliable support for smaller-size objects.
In this work, we evaluate the use of superpixel pooling layers in deep network architectures for semantic segmentation. Superpixel pooling is a flexible and efficient replacement for other pooling strategies that incorporates spatial prior information. We propose a simple and efficient GPU-implementation of the layer and explore several designs for the integration of the layer into existing network architectures. We provide experimental results on the IBSR and Cityscapes dataset, demonstrating that superpixel pooling can be leveraged to consistently increase network accuracy with minimal computational overhead. Source code is available at https://github.com/bermanmaxim/superpixPool
Fully convolutional neural networks give accurate, per-pixel prediction for input images and have applications like semantic segmentation. However, a typical FCN usually requires lots of floating point computation and large run-time memory, which effectively limits its usability. We propose a method to train Bit Fully Convolution Network (BFCN), a fully convolutional neural network that has low bit-width weights and activations. Because most of its computation-intensive convolutions are accomplished between low bit-width numbers, a BFCN can be accelerated by an efficient bit-convolution implementation. On CPU, the dot product operation between two bit vectors can be reduced to bitwise operations and popcounts, which can offer much higher throughput than 32-bit multiplications and additions. To validate the effectiveness of BFCN, we conduct experiments on the PASCAL VOC 2012 semantic segmentation task and Cityscapes. Our BFCN with 1-bit weights and 2-bit activations, which runs 7.8x faster on CPU or requires less than 1% resources on FPGA, can achieve comparable performance as the 32-bit counterpart.
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