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A median-type condition for graph tiling

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 Added by Diana Piguet
 Publication date 2018
  fields
and research's language is English




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Komlos [Tiling Turan theorems, Combinatorica, 20,2 (2000), 203{218] determined the asymptotically optimal minimum degree condition for covering a given proportion of vertices of a host graph by vertex-disjoint copies of a fixed graph. We show that the minimum degree condition can be relaxed in the sense that we require only a given fraction of vertices to have the prescribed degree.

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Quasi-median graphs are a tool commonly used by evolutionary biologists to visualise the evolution of molecular sequences. As with any graph, a quasi-median graph can contain cut vertices, that is, vertices whose removal disconnect the graph. These vertices induce a decomposition of the graph into blocks, that is, maximal subgraphs which do not contain any cut vertices. Here we show that the special structure of quasi-median graphs can be used to compute their blocks without having to compute the whole graph. In particular we present an algorithm that, for a collection of $n$ aligned sequences of length $m$, can compute the blocks of the associated quasi-median graph together with the information required to correctly connect these blocks together in run time $mathcal O(n^2m^2)$, independent of the size of the sequence alphabet. Our primary motivation for presenting this algorithm is the fact that the quasi-median graph associated to a sequence alignment must contain all most parsimonious trees for the alignment, and therefore precomputing the blocks of the graph has the potential to help speed up any method for computing such trees.
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In this paper a closed form expression for the number of tilings of an $ntimes n$ square border with $1times 1$ and $2times1$ cuisenaire rods is proved using a transition matrix approach. This problem is then generalised to $mtimes n$ rectangular borders. The number of distinct tilings up to rotational symmetry is considered, and closed form expressions are given, in the case of a square border and in the case of a rectangular border. Finally, the number of distinct tilings up to dihedral symmetry is considered, and a closed form expression is given in the case of a square border.
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