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Lower bounds for moments of global scores of pairwise Markov chains

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 Added by Fabio Zucca
 Publication date 2016
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and research's language is English




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Let $X_1,X_2,ldots$ and $Y_1,Y_2,ldots$ be two random sequences so that every random variable takes values in a finite set $mathbb{A}$. We consider a global similarity score $L_n:=L(X_1,ldots,X_n;Y_1,ldots,Y_n)$ that measures the homology (relatedness) of words $(X_1,ldots,X_n)$ and $(Y_1,ldots,Y_n)$. A typical example of such score is the length of the longest common subsequence. We study the order of central absolute moment $E|L_n-EL_n|^r$ in the case where two-dimensional process $(X_1,Y_1),(X_2,Y_2),ldots$ is a Markov chain on $mathbb{A}times mathbb{A}$. This is a very general model involving independent Markov chains, hidden Markov models, Markov switching models and many more. Our main result establishes a general condition that guarantees that $E|L_n-EL_n|^rasymp n^{rover 2}$. We also perform simulations indicating the validity of the condition.



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Convergence rates of Markov chains have been widely studied in recent years. In particular, quantitative bounds on convergence rates have been studied in various forms by Meyn and Tweedie [Ann. Appl. Probab. 4 (1994) 981-1101], Rosenthal [J. Amer. Statist. Assoc. 90 (1995) 558-566], Roberts and Tweedie [Stochastic Process. Appl. 80 (1999) 211-229], Jones and Hobert [Statist. Sci. 16 (2001) 312-334] and Fort [Ph.D. thesis (2001) Univ. Paris VI]. In this paper, we extend a result of Rosenthal [J. Amer. Statist. Assoc. 90 (1995) 558-566] that concerns quantitative convergence rates for time-homogeneous Markov chains. Our extension allows us to consider f-total variation distance (instead of total variation) and time-inhomogeneous Markov chains. We apply our results to simulated annealing.
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