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Register a new userBayesian Inference for Radio Observations - Going beyond deconvolution
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Radio interferometers suffer from the problem of missing information in their data, due to the gaps between the antennas. This results in artifacts, such as bright rings around sources, in the images obtained. Multiple deconvolution algorithms have been proposed to solve this problem and produce cleaner radio images. However, these algorithms are unable to correctly estimate uncertainties in derived scientific parameters or to always include the effects of instrumental errors. We propose an alternative technique called Bayesian Inference for Radio Observations (BIRO) which uses a Bayesian statistical framework to determine the scientific parameters and instrumental errors simultaneously directly from the raw data, without making an image. We use a simple simulation of Westerbork Synthesis Radio Telescope data including pointing errors and beam parameters as instrumental effects, to demonstrate the use of BIRO.
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New telescopes like the Square Kilometre Array (SKA) will push into a new sensitivity regime and expose systematics, such as direction-dependent effects, that could previously be ignored. Current methods for handling such systematics rely on alternating best estimates of instrumental calibration and models of the underlying sky, which can lead to inadequate uncertainty estimates and biased results because any correlations between parameters are ignored. These deconvolution algorithms produce a single image that is assumed to be a true representation of the sky, when in fact it is just one realization of an infinite ensemble of images compatible with the noise in the data. In contrast, here we report a Bayesian formalism that simultaneously infers both systematics and science. Our technique, Bayesian Inference for Radio Observations (BIRO), determines all parameters directly from the raw data, bypassing image-making entirely, by sampling from the joint posterior probability distribution. This enables it to derive both correlations and accurate uncertainties, making use of the flexible software MEQTREES to model the sky and telescope simultaneously. We demonstrate BIRO with two simulated sets of Westerbork Synthesis Radio Telescope data sets. In the first, we perform joint estimates of 103 scientific (flux densities of sources) and instrumental (pointing errors, beamwidth and noise) parameters. In the second example, we perform source separation with BIRO. Using the Bayesian evidence, we can accurately select between a single point source, two point sources and an extended Gaussian source, allowing for super-resolution on scales much smaller than the synthesized beam.
We introduce the Fast Holographic Deconvolution method for analyzing interferometric radio data. Our new method is an extension of A-projection/software-holography/forward modeling analysis techniques and shares their precision deconvolution and widefield polarimetry, while being significantly faster than current implementations that use full direction-dependent antenna gains. Using data from the MWA 32 antenna prototype, we demonstrate the effectiveness and precision of our new algorithm. Fast Holographic Deconvolution may be particularly important for upcoming 21 cm cosmology observations of the Epoch of Reionization and Dark Energy where foreground subtraction is intimately related to the precision of the data reduction.
The extremely regular, periodic radio emission from millisecond pulsars makes them useful tools for studying neutron star astrophysics, general relativity, and low-frequency gravitational waves. These studies require that the observed pulse times of arrival be fit to complex timing models that describe numerous effects such as the astrometry of the source, the evolution of the pulsars spin, the presence of a binary companion, and the propagation of the pulses through the interstellar medium. In this paper, we discuss the benefits of using Bayesian inference to obtain pulsar timing solutions. These benefits include the validation of linearized least-squares model fits when they are correct, and the proper characterization of parameter uncertainties when they are not; the incorporation of prior parameter information and of models of correlated noise; and the Bayesian comparison of alternative timing models. We describe our computational setup, which combines the timing models of Tempo2 with the nested-sampling integrator MultiNest. We compare the timing solutions generated using Bayesian inference and linearized least-squares for three pulsars: B1953+29, J2317+1439, and J1640+2224, which demonstrate a variety of the benefits that we posit.
We present Montblanc, a GPU implementation of the Radio interferometer measurement equation (RIME) in support of the Bayesian inference for radio observations (BIRO) technique. BIRO uses Bayesian inference to select sky models that best match the visibilities observed by a radio interferometer. To accomplish this, BIRO evaluates the RIME multiple times, varying sky model parameters to produce multiple model visibilities. Chi-squared values computed from the model and observed visibilities are used as likelihood values to drive the Bayesian sampling process and select the best sky model. As most of the elements of the RIME and chi-squared calculation are independent of one another, they are highly amenable to parallel computation. Additionally, Montblanc caters for iterative RIME evaluation to produce multiple chi-squared values. Modified model parameters are transferred to the GPU between each iteration. We implemented Montblanc as a Python package based upon NVIDIAs CUDA architecture. As such, it is easy to extend and implement different pipelines. At present, Montblanc supports point and Gaussian morphologies, but is designed for easy addition of new source profiles. Montblancs RIME implementation is performant: On an NVIDIA K40, it is approximately 250 times faster than MeqTrees on a dual hexacore Intel E5-2620v2 CPU. Compared to the OSKAR simulators GPU-implemented RIME components it is 7.7 and 12 times faster on the same K40 for single and double-precision floating point respectively. However, OSKARs RIME implementation is more general than Montblancs BIRO-tailored RIME. Theoretical analysis of Montblancs dominant CUDA kernel suggests that it is memory bound. In practice, profiling shows that is balanced between compute and memory, as much of the data required by the problem is retained in L1 and L2 cache.
We introduce zeus, a well-tested Python implementation of the Ensemble Slice Sampling (ESS) method for Bayesian parameter inference. ESS is a novel Markov chain Monte Carlo (MCMC) algorithm specifically designed to tackle the computational challenges posed by modern astronomical and cosmological analyses. In particular, the method requires no hand-tuning of any hyper-parameters, its performance is insensitive to linear correlations and it can scale up to 1000s of CPUs without any extra effort. Furthermore, its locally adaptive nature allows to sample efficiently even when strong non-linear correlations are present. Lastly, the method achieves a high performance even in strongly multimodal distributions in high dimensions. Compared to emcee, a popular MCMC sampler, zeus performs 9 and 29 times better in a cosmological and an exoplanet application respectively.
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