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Register a new userLattice Percolation Approach to Numerical Modeling of Tissue Aging
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We describe a percolation-type approach to modeling of the processes of aging and certain other properties of tissues analyzed as systems consisting of interacting cells. Tissues are considered as structures made of regular healthy, senescent, dead (apoptotic) cells, and studied dynamically, with the ongoing processes including regular cell division to fill vacant sites left by dead cells, healthy cells becoming senescent or dying, and other processes. Statistical-mechanics description can provide patterns of time dependence and snapshots of morphological system properties. An illustrative application of the developed theoretical modeling approach is reported, confirming recent experimental findings that inhibition of senescence can lead to extended lifespan.
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We describe a 3D percolation-type approach to modeling of the processes of aging and certain other properties of tissues analyzed as systems consisting of interacting cells. Lattice sites are designated as regular (healthy) cells, senescent cells, or vacancies left by dead (apoptotic) cells. The system is then studied dynamically with the ongoing processes including regular cell dividing to fill vacant sites, healthy cells becoming senescent or dying, and senescent cells dying. Statistical-mechanics description can provide patterns of time dependence and snapshots of morphological system properties. The developed theoretical modeling approach is found not only to corroborate recent experimental findings that inhibition of senescence can lead to extended lifespan, but also to confirm that, unlike 2D, in 3D senescent cells can contribute to tissues connectivity/mechanical stability. The latter effect occurs by senescent cells forming the second infinite cluster in the regime when the regular (healthy) cells infinite cluster still exits.
A stochastic genetic model for biological aging is introduced bridging the gap between the bit-string Penna model and the Pletcher-Neuhauser approach. The phenomenon of exponentially increasing mortality function at intermediate ages and its deceleration at advanced ages is reproduced for both the evolutionary steady-state population and the genetically homogeneous individuals.
We discuss various situations where the formation of rocky coast morphology can be attributed to the retro-action of the coast morphology itself on the erosive power of the sea. Destroying the weaker elements of the coast, erosion can creates irregular seashores. In turn, the geometrical irregularity participates in the damping of sea-waves, decreasing their erosive power. There may then exist a mutual self-stabilization of the wave amplitude together with the irregular morphology of the coast. A simple model of this type of stabilization is discussed. The resulting coastline morphologies are diverse, depending mainly on the morphology/damping coupling. In the limit case of weak coupling, the process spontaneously builds fractal morphologies with a dimension close to 4/3. This provides a direct connection between the coastal erosion problem and the theory of percolation. For strong coupling, rugged but non-fractal coasts may emerge during the erosion process, and we investigate a geometrical characterization in these cases. The model is minimal, but can be extended to take into account heterogeneity in the rock lithology and various initial conditions. This allows to mimic coastline complexity, well beyond simple fractality. Our results suggest that the irregular morphology of coastlines as well as the stochastic nature of erosion are deeply connected with the critical aspects of percolation phenomena.
We review the field theory approach to percolation processes. Specifically, we focus on the so-called simple and general epidemic processes that display continuous non-equilibrium active to absorbing state phase transitions whose asymptotic features are governed respectively by the directed (DP) and dynamic isotropic percolation (dIP) universality classes. We discuss the construction of a field theory representation for these Markovian stochastic processes based on fundamental phenomenological considerations, as well as from a specific microscopic reaction-diffusion model realization. Subsequently we explain how dynamic renormalization group (RG) methods can be applied to obtain the universal properties near the critical point in an expansion about the upper critical dimensions d_c = 4 (DP) and 6 (dIP). We provide a detailed overview of results for critical exponents, scaling functions, crossover phenomena, finite-size scaling, and also briefly comment on the influence of long-range spreading, the presence of a boundary, multispecies generalizations, coupling of the order parameter to other conserved modes, and quenched disorder.
We investigate the first-passage dynamics of symmetric and asymmetric Levy flights in a semi-infinite and bounded intervals. By solving the space-fractional diffusion equation, we analyse the fractional-order moments of the first-passage time probability density function for different values of the index of stability and the skewness parameter. A comparison with results using the Langevin approach to Levy flights is presented. For the semi-infinite domain, in certain special cases analytic results are derived explicitly, and in bounded intervals a general analytical expression for the mean first-passage time of Levy flights with arbitrary skewness is presented. These results are complemented with extensive numerical analyses.
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