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Register a new userEnergetics of single active diffusion trajectories
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The fundamental insight into Brownian motion by Einstein is that all substances exhibit continual fluctuations due to thermal agitation balancing with the frictional resistance. However, even at thermal equilibrium, biological activity can give rise to non-equilibrium fluctuations that cause ``active diffusion in living cells. Because of the non-stationary and non-equilibrium nature of such fluctuations, mean square displacement analysis, relevant only to a steady state ensemble, may not be the most suitable choice as it depends on the choice of the ensemble; hence, a new analytical method for describing active diffusion is desired. Here we discuss the stochastic energetics of a thermally fluctuating single active diffusion trajectory driven by non-thermal random forces. Heat dissipation, usually difficult to measure, can be estimated from the active diffusion trajectory; guidelines on the analysis such as criteria for the time resolution and driving force intensity are shown by a statistical test. This leads to the concept of an ``instantaneous diffusion coefficient connected to heat dissipation that may be used to analyse the activity and molecular transport mechanisms of living systems.
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We follow the dynamics of an ensemble of interacting self-propelled motorized particles in contact with an equilibrated thermal bath. We find that the fluctuation-dissipation relation allows for the definition of an effective temperature that is compatible with the results obtained using a tracer particle as a thermometer. The effective temperature takes a value which is higher than the temperature of the bath and it is continuously controlled by the motor intensity.
The nonequilibrium activity taking place in a living cell can be monitored with a tracer embedded in the medium. While microrheology experiments based on optical manipulation of such probes have become increasingly standard, we put forward a number of experiments with alternative protocols that, we claim, will provide new insight into the energetics of active fluctuations. These are based on either performing thermodynamic--like cycles in control-parameter space, or on determining response to external perturbations of the confining trap beyond simple translation. We illustrate our proposals on an active itinerant Brownian oscillator modeling the dynamics of a probe embedded in a living medium.
We demonstrate a novel method of introducing point defects (mono and di-vacancies) in a confined mono-layer colloidal crystal by manipulating individual particles with optical tweezers. Digital video microscopy is used to study defect dynamics in real space and time. We analyze the topological arrangements of the particles in the defect core and establish their connection with the energetics of the system. It is found that thermal fluctuations excite point defects into textit{dislocation multipole} configurations. We extract the dislocation pair potential at near field, where cores overlap and linear elasticity is not applicable.
Anomalous diffusion or, more generally, anomalous transport, with nonlinear dependence of the mean-squared displacement on the measurement time, is ubiquitous in nature. It has been observed in processes ranging from microscopic movement of molecules to macroscopic, large-scale paths of migrating birds. Using data from multiple empirical systems, spanning 12 orders of magnitude in length and 8 orders of magnitude in time, we employ a method to detect the individual underlying origins of anomalous diffusion and transport in the data. This method decomposes anomalous transport into three primary effects: long-range correlations (Joseph effect), fat-tailed probability density of increments (Noah effect), and non-stationarity (Moses effect). We show that such a decomposition of real-life data allows to infer nontrivial behavioral predictions, and to resolve open questions in the fields of single particle cell tracking and movement ecology.
We recently argued that a self-propelled particle is formally equivalent to a system consisting of two subsystems coupled by a non-reciprocal interaction [Phys. Rev. E 100, 050603(R) (2019)]. Here we show that this non-reciprocal coupling allows to extract useful work from a single self-propelled particle maintained at constant temperature, by using an aligning interaction to influence correlations between the particles position and self-propulsion.
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