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How to represent crystal structures for machine learning: towards fast prediction of electronic properties

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 Added by Antonio Sanna
 Publication date 2013
  fields Physics
and research's language is English




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High-throughput density-functional calculations of solids are extremely time consuming. As an alternative, we here propose a machine learning approach for the fast prediction of solid-state properties. To achieve this, LSDA calculations are used as training set. We focus on predicting metallic vs. insulating behavior, and on predicting the value of the density of electronic states at the Fermi energy. We find that conventional representations of the input data, such as the Coulomb matrix, are not suitable for the training of learning machines in the case of periodic solids. We propose a novel crystal structure representation for which learning and competitive prediction accuracies become possible within an unrestricted class of spd systems. Due to magnetic phenomena learning on d systems is found more difficult than in pure sp systems.



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Geometric information such as the space groups and crystal systems plays an important role in the properties of crystal materials. Prediction of crystal system and space group thus has wide applications in crystal material property estimation and structure prediction. Previous works on experimental X-ray diffraction (XRD) and density functional theory (DFT) based structure determination methods achieved outstanding performance, but they are not applicable for large-scale screening of materials compositions. There are also machine learning models using Magpie descriptors for composition based material space group determination, but their prediction accuracy only ranges between 0.638 and 0.907 in different kinds of crystals. Herein, we report an improved machine learning model for predicting the crystal system and space group of materials using only the formula information. Benchmark study on a dataset downloaded from Materials Project Database shows that our random forest models based on our new descriptor set, achieve significant performance improvements compared with previous work with accuracy scores ranging between 0.712 and 0.961 in terms of space group classification. Our model also shows large performance improvement for crystal system prediction. Trained models and source code are freely available at url{https://github.com/Yuxinya/SG_predict}
In this study, we present a novel approach along with the needed computational strategies for efficient and scalable feature engineering of the crystal structure in compounds of different chemical compositions. This approach utilizes a versatile and extensible framework for the quantification of a three-dimensional (3-D) voxelized crystal structure in the form of 2-point spatial correlations of multiple atomic attributes and performs principal component analysis to extract the low-dimensional features that could be used to build surrogate models for material properties of interest. An application of the proposed feature engineering framework is demonstrated on a case study involving the prediction of the formation energies of crystalline compounds using two vastly different surrogate model building strategies - local Gaussian process regression and neural networks. Specifically, it is shown that the top 25 features (i.e., principal component scores) identified by the proposed framework serve as good regressors for the formation energy of the crystalline substance for both model building strategies.
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