Subscribe to the gold package and get unlimited access to Shamra Academy
Register a new userClinical Relationships Extraction Techniques from Patient Narratives
109
0
0.0
(
0
)
Added by
Wafaa Tawfik abdel-moneim
Publication date
2013
fields
Informatics Engineering
and research's language is
English
Ask ChatGPT about the research
No Arabic abstract
The Clinical E-Science Framework (CLEF) project was used to extract important information from medical texts by building a system for the purpose of clinical research, evidence-based healthcare and genotype-meets-phenotype informatics. The system is divided into two parts, one part concerns with the identification of relationships between clinically important entities in the text. The full parses and domain-specific grammars had been used to apply many approaches to extract the relationship. In the second part of the system, statistical machine learning (ML) approaches are applied to extract relationship. A corpus of oncology narratives that hand annotated with clinical relationships can be used to train and test a system that has been designed and implemented by supervised machine learning (ML) approaches. Many features can be extracted from these texts that are used to build a model by the classifier. Multiple supervised machine learning algorithms can be applied for relationship extraction. Effects of adding the features, changing the size of the corpus, and changing the type of the algorithm on relationship extraction are examined. Keywords: Text mining; information extraction; NLP; entities; and relations.
rate research
Read More
Identification of new concepts in scientific literature can help power faceted search, scientific trend analysis, knowledge-base construction, and more, but current methods are lacking. Manual identification cannot keep up with the torrent of new publications, while the precision of existing automatic techniques is too low for many applications. We present an unsupervised concept extraction method for scientific literature that achieves much higher precision than previous work. Our approach relies on a simple but novel intuition: each scientific concept is likely to be introduced or popularized by a single paper that is disproportionately cited by subsequent papers mentioning the concept. From a corpus of computer science papers on arXiv, we find that our method achieves a Precision@1000 of 99%, compared to 86% for prior work, and a substantially better precision-yield trade-off across the top 15,000 extractions. To stimulate research in this area, we release our code and data (https://github.com/allenai/ForeCite).
In this paper, we investigate how semantic relations between concepts extracted from medical documents can be employed to improve the retrieval of medical literature. Semantic relations explicitly represent relatedness between concepts and carry high informative power that can be leveraged to improve the effectiveness of retrieval functionalities of clinical decision support systems. We present preliminary results and show how relations are able to provide a sizable increase of the precision for several topics, albeit having no impact on others. We then discuss some future directions to minimize the impact of negative results while maximizing the impact of good results.
Timely analysis of cyber-security information necessitates automated information extraction from unstructured text. While state-of-the-art extraction methods produce extremely accurate results, they require ample training data, which is generally unavailable for specialized applications, such as detecting security related entities; moreover, manual annotation of corpora is very costly and often not a viable solution. In response, we develop a very precise method to automatically label text from several data sources by leveraging related, domain-specific, structured data and provide public access to a corpus annotated with cyber-security entities. Next, we implement a Maximum Entropy Model trained with the average perceptron on a portion of our corpus ($sim$750,000 words) and achieve near perfect precision, recall, and accuracy, with training times under 17 seconds.
This paper describes our submission for the SemEval 2018 Task 7 shared task on semantic relation extraction and classification in scientific papers. We extend the end-to-end relation extraction model of (Miwa and Bansal) with enhancements such as a character-level encoding attention mechanism on selecting pretrained concept candidate embeddings. Our official submission ranked the second in relation classification task (Subtask 1.1 and Subtask 2 Senerio 2), and the first in the relation extraction task (Subtask 2 Scenario 1).
This paper reports on modern approaches in Information Extraction (IE) and its two main sub-tasks of Named Entity Recognition (NER) and Relation Extraction (RE). Basic concepts and the most recent approaches in this area are reviewed, which mainly include Machine Learning (ML) based approaches and the more recent trend to Deep Learning (DL) based methods.
Log in to be able to interact and post comments
comments
Fetching comments
Sign in to be able to follow your search criteria
