Subscribe to the gold package and get unlimited access to Shamra Academy
Register a new userFindZebra: A search engine for rare diseases
136
0
0.0
(
0
)
Added by
Radu Dragusin
Publication date
2013
fields
Informatics Engineering
and research's language is
English
Ask ChatGPT about the research
No Arabic abstract
Background: The web has become a primary information resource about illnesses and treatments for both medical and non-medical users. Standard web search is by far the most common interface for such information. It is therefore of interest to find out how well web search engines work for diagnostic queries and what factors contribute to successes and failures. Among diseases, rare (or orphan) diseases represent an especially challenging and thus interesting class to diagnose as each is rare, diverse in symptoms and usually has scattered resources associated with it. Methods: We use an evaluation approach for web search engines for rare disease diagnosis which includes 56 real life diagnostic cases, state-of-the-art evaluation measures, and curated information resources. In addition, we introduce FindZebra, a specialized (vertical) rare disease search engine. FindZebra is powered by open source search technology and uses curated freely available online medical information. Results: FindZebra outperforms Google Search in both default setup and customised to the resources used by FindZebra. We extend FindZebra with specialized functionalities exploiting medical ontological information and UMLS medical concepts to demonstrate different ways of displaying the retrieved results to medical experts. Conclusions: Our results indicate that a specialized search engine can improve the diagnostic quality without compromising the ease of use of the currently widely popular web search engines. The proposed evaluation approach can be valuable for future development and benchmarking. The FindZebra search engine is available at http://www.findzebra.com/.
rate research
Read More
Coronavirus disease (COVID-19) has been declared as a pandemic by WHO with thousands of cases being reported each day. Numerous scientific articles are being published on the disease raising the need for a service which can organize, and query them in a reliable fashion. To support this cause we present AWS CORD-19 Search (ACS), a public, COVID-19 specific, neural search engine that is powered by several machine learning systems to support natural language based searches. ACS with capabilities such as document ranking, passage ranking, question answering and topic classification provides a scalable solution to COVID-19 researchers and policy makers in their search and discovery for answers to high priority scientific questions. We present a quantitative evaluation and qualitative analysis of the system against other leading COVID-19 search platforms. ACS is top performing across these systems yielding quality results which we detail with relevant examples in this work.
Searching for concepts in science and technology is often a difficult task. To facilitate concept search, different types of human-generated metadata have been created to define the content of scientific and technical disclosures. Classification schemes such as the International Patent Classification (IPC) and MEDLINEs MeSH are structured and controlled, but require trained experts and central management to restrict ambiguity (Mork, 2013). While unstructured tags of folksonomies can be processed to produce a degree of structure (Kalendar, 2010; Karampinas, 2012; Sarasua, 2012; Bragg, 2013) the freedom enjoyed by the crowd typically results in less precision (Stock 2007). Existing classification schemes suffer from inflexibility and ambiguity. Since humans understand language, inference, implication, abstraction and hence concepts better than computers, we propose to harness the collective wisdom of the crowd. To do so, we propose a novel classification scheme that is sufficiently intuitive for the crowd to use, yet powerful enough to facilitate search by analogy, and flexible enough to deal with ambiguity. The system will enhance existing classification information. Linking up with the semantic web and computer intelligence, a Citizen Science effort (Good, 2013) would support innovation by improving the quality of granted patents, reducing duplicitous research, and stimulating problem-oriented solution design. A prototype of our design is in preparation. A crowd-sourced fuzzy and faceted classification scheme will allow for better concept search and improved access to prior art in science and technology.
Many geoportals such as ArcGIS Online are established with the goal of improving geospatial data reusability and achieving intelligent knowledge discovery. However, according to previous research, most of the existing geoportals adopt Lucene-based techniques to achieve their core search functionality, which has a limited ability to capture the users search intentions. To better understand a users search intention, query expansion can be used to enrich the users query by adding semantically similar terms. In the context of geoportals and geographic information retrieval, we advocate the idea of semantically enriching a users query from both geospatial and thematic perspectives. In the geospatial aspect, we propose to enrich a query by using both place partonomy and distance decay. In terms of the thematic aspect, concept expansion and embedding-based document similarity are used to infer the implicit information hidden in a users query. This semantic query expansion 1 2 G. Mai et al. framework is implemented as a semantically-enriched search engine using ArcGIS Online as a case study. A benchmark dataset is constructed to evaluate the proposed framework. Our evaluation results show that the proposed semantic query expansion framework is very effective in capturing a users search intention and significantly outperforms a well-established baseline-Lucenes practical scoring function-with more than 3.0 increments in DCG@K (K=3,5,10).
Since its emergence in the 1990s the World Wide Web (WWW) has rapidly evolved into a huge mine of global information and it is growing in size everyday. The presence of huge amount of resources on the Web thus poses a serious problem of accurate search. This is mainly because todays Web is a human-readable Web where information cannot be easily processed by machine. Highly sophisticated, efficient keyword based search engines that have evolved today have not been able to bridge this gap. So comes up the concept of the Semantic Web which is envisioned by Tim Berners-Lee as the Web of machine interpretable information to make a machine processable form for expressing information. Based on the semantic Web technologies we present in this paper the design methodology and development of a semantic Web search engine which provides exact search results for a domain specific search. This search engine is developed for an agricultural Website which hosts agricultural information about the state of West Bengal.
The task of expert finding has been getting increasing attention in information retrieval literature. However, the current state-of-the-art is still lacking in principled approaches for combining different sources of evidence in an optimal way. This paper explores the usage of learning to rank methods as a principled approach for combining multiple estimators of expertise, derived from the textual contents, from the graph-structure with the citation patterns for the community of experts, and from profile information about the experts. Experiments made over a dataset of academic publications, for the area of Computer Science, attest for the adequacy of the proposed approaches.
Log in to be able to interact and post comments
comments
Fetching comments
Sign in to be able to follow your search criteria
