No Arabic abstract
In the United States the preferred method of obtaining dietary intake data is the 24-hour dietary recall, yet the measure of most interest is usual or long-term average daily intake, which is impossible to measure. Thus, usual dietary intake is assessed with considerable measurement error. Also, diet represents numerous foods, nutrients and other components, each of which have distinctive attributes. Sometimes, it is useful to examine intake of these components separately, but increasingly nutritionists are interested in exploring them collectively to capture overall dietary patterns. Consumption of these components varies widely: some are consumed daily by almost everyone on every day, while others are episodically consumed so that 24-hour recall data are zero-inflated. In addition, they are often correlated with each other. Finally, it is often preferable to analyze the amount of a dietary component relative to the amount of energy (calories) in a diet because dietary recommendations often vary with energy level. The quest to understand overall dietary patterns of usual intake has to this point reached a standstill. There are no statistical methods or models available to model such complex multivariate data with its measurement error and zero inflation. This paper proposes the first such model, and it proposes the first workable solution to fit such a model. After describing the model, we use survey-weighted MCMC computations to fit the model, with uncertainty estimation coming from balanced repeated replication.
Microorganisms play critical roles in human health and disease. It is well known that microbes live in diverse communities in which they interact synergistically or antagonistically. Thus for estimating microbial associations with clinical covariates, multivariate statistical models are preferred. Multivariate models allow one to estimate and exploit complex interdependencies among multiple taxa, yielding more powerful tests of exposure or treatment effects than application of taxon-specific univariate analyses. In addition, the analysis of microbial count data requires special attention because data commonly exhibit zero inflation. To meet these needs, we developed a Bayesian variable selection model for multivariate count data with excess zeros that incorporates information on the covariance structure of the outcomes (counts for multiple taxa), while estimating associations with the mean levels of these outcomes. Although there has been a great deal of effort in zero-inflated models for longitudinal data, little attention has been given to high-dimensional multivariate zero-inflated data modeled via a general correlation structure. Through simulation, we compared performance of the proposed method to that of existing univariate approaches, for both the binary and count parts of the model. When outcomes were correlated the proposed variable selection method maintained type I error while boosting the ability to identify true associations in the binary component of the model. For the count part of the model, in some scenarios the the univariate method had higher power than the multivariate approach. This higher power was at a cost of a highly inflated false discovery rate not observed with the proposed multivariate method. We applied the approach to oral microbiome data from the Pediatric HIV/AIDS Cohort Oral Health Study and identified five species (of 44) associated with HIV infection.
Background: Maintaining a healthy diet is vital to avoid health-related issues, e.g., undernutrition, obesity and many non-communicable diseases. An indispensable part of the health diet is dietary assessment. Traditional manual recording methods are burdensome and contain substantial biases and errors. Recent advances in Artificial Intelligence, especially computer vision technologies, have made it possible to develop automatic dietary assessment solutions, which are more convenient, less time-consuming and even more accurate to monitor daily food intake. Scope and approach: This review presents one unified Vision-Based Dietary Assessment (VBDA) framework, which generally consists of three stages: food image analysis, volume estimation and nutrient derivation. Vision-based food analysis methods, including food recognition, detection and segmentation, are systematically summarized, and methods of volume estimation and nutrient derivation are also given. The prosperity of deep learning makes VBDA gradually move to an end-to-end implementation, which applies food images to a single network to directly estimate the nutrition. The recently proposed end-to-end methods are also discussed. We further analyze existing dietary assessment datasets, indicating that one large-scale benchmark is urgently needed, and finally highlight key challenges and future trends for VBDA. Key findings and conclusions: After thorough exploration, we find that multi-task end-to-end deep learning approaches are one important trend of VBDA. Despite considerable research progress, many challenges remain for VBDA due to the meal complexity. We also provide the latest ideas for future development of VBDA, e.g., fine-grained food analysis and accurate volume estimation. This survey aims to encourage researchers to propose more practical solutions for VBDA.
Image-based dietary assessment refers to the process of determining what someone eats and how much energy and nutrients are consumed from visual data. Food classification is the first and most crucial step. Existing methods focus on improving accuracy measured by the rate of correct classification based on visual information alone, which is very challenging due to the high complexity and inter-class similarity of foods. Further, accuracy in food classification is conceptual as description of a food can always be improved. In this work, we introduce a new food classification framework to improve the quality of predictions by integrating the information from multiple domains while maintaining the classification accuracy. We apply a multi-task network based on a hierarchical structure that uses both visual and nutrition domain specific information to cluster similar foods. Our method is validated on the modified VIPER-FoodNet (VFN) food image dataset by including associated energy and nutrient information. We achieve comparable classification accuracy with existing methods that use visual information only, but with less error in terms of energy and nutrient values for the wrong predictions.
Food volume estimation is an essential step in the pipeline of dietary assessment and demands the precise depth estimation of the food surface and table plane. Existing methods based on computer vision require either multi-image input or additional depth maps, reducing convenience of implementation and practical significance. Despite the recent advances in unsupervised depth estimation from a single image, the achieved performance in the case of large texture-less areas needs to be improved. In this paper, we propose a network architecture that jointly performs geometric understanding (i.e., depth prediction and 3D plane estimation) and semantic prediction on a single food image, enabling a robust and accurate food volume estimation regardless of the texture characteristics of the target plane. For the training of the network, only monocular videos with semantic ground truth are required, while the depth map and 3D plane ground truth are no longer needed. Experimental results on two separate food image databases demonstrate that our method performs robustly on texture-less scenarios and is superior to unsupervised networks and structure from motion based approaches, while it achieves comparable performance to fully-supervised methods.
Although basketball is a dynamic process sport, with 5 plus 5 players competing on both offense and defense simultaneously, learning some static information is predominant for professional players, coaches and team mangers. In order to have a deep understanding of field goal attempts among different players, we propose a zero inflated Poisson model with clustered regression coefficients to learn the shooting habits of different players over the court and the heterogeneity among them. Specifically, the zero inflated model recovers the large proportion of the court with zero field goal attempts, and the mixture of finite mixtures model learn the heterogeneity among different players based on clustered regression coefficients and inflated probabilities. Both theoretical and empirical justification through simulation studies validate our proposed method. We apply our proposed model to the National Basketball Association (NBA), for learning players shooting habits and heterogeneity among different players over the 2017--2018 regular season. This illustrates our model as a way of providing insights from different aspects.