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Register a new userThe struggle for space: Viral extinction through competition for cells
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The design of protocols to suppress the propagation of viral infections is an enduring enterprise, especially hindered by limited knowledge of the mechanisms through which extinction of infection propagation comes about. We here report on a mechanism causing extinction of a propagating infection due to intraspecific competition to infect susceptible hosts. Beneficial mutations allow the pathogen to increase the production of progeny, while the host cell is allowed to develop defenses against infection. When the number of susceptible cells is unlimited, a feedback runaway co-evolution between host resistance and progeny production occurs. However, physical space limits the advantage that the virus can obtain from increasing offspring numbers, thus infection clearance may result from an increase in host defenses beyond a finite threshold. Our results might be relevant to better understand propagation of viral infections in tissues with mobility constraints, and the implications that environments with different geometrical properties might have in devising control strategies.
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The flux of visitors through popular places undoubtedly influences viral spreading -- from H1N1 and Zika viruses spreading through physical spaces such as airports, to rumors and ideas spreading though online spaces such as chatrooms and social media. However there is a lack of understanding of the types of viral dynamics that can result. Here we present a minimal dynamical model which focuses on the time-dependent interplay between the {em mobility through} and the {em occupancy of} such spaces. Our generic model permits analytic analysis while producing a rich diversity of infection profiles in terms of their shapes, durations, and intensities. The general features of these theoretical profiles compare well to real-world data of recent social contagion phenomena.
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Microbial electrolysis cells (MECs) employ electroactive bacteria to perform extracellular electron transfer, enabling hydrogen generation from biodegradable substrates. In previous work, we developed and analyzed a differential-algebraic equation (DAE) model for MECs. The model resembles a chemostat with ordinary differential equations (ODEs) for concentrations of substrate, microorganisms, and an extracellular mediator involved in electron transfer. There is also an algebraic constraint for electric current and hydrogen production. Our goal is to determine the outcome of competition between methanogenic archaea and electroactive bacteria, because only the latter contribute to electric current and resulting hydrogen production. We investigate asymptotic stability in two industrially releva
Adaptive dynamics is a widely used framework for modeling long-term evolution of continuous phenotypes. It is based on invasion fitness functions, which determine selection gradients and the canonical equation of adaptive dynamics. Even though the derivation of the adaptive dynamics from a given invasion fitness function is general and model-independent, the derivation of the invasion fitness function itself requires specification of an underlying ecological model. Therefore, evolutionary insights gained from adaptive dynamics models are generally model-dependent. Logistic models for symmetric, frequency-dependent competition are widely used in this context. Such models have the property that the selection gradients derived from them are gradients of scalar functions, which reflects a certain gradient property of the corresponding invasion fitness function. We show that any adaptive dynamics model that is based on an invasion fitness functions with this gradient property can be transformed into a generalized symmetric competition model. This provides a precise delineation of the generality of results derived from competition models. Roughly speaking, to understand the adaptive dynamics of the class of models satisfying a certain gradient condition, one only needs a complete understanding of the adaptive dynamics of symmetric, frequency-dependent competition. We show how this result can be applied to number of basic issues in evolutionary theory.
We explore the role of cellular life cycles for viruses and host cells in an infection process. For this purpose, we derive a generalized version of the basic model of virus dynamics (Nowak, M.A., Bangham, C.R.M., 1996. Population dynamics of immune responses to persistent viruses. Science 272, 74-79) from a mesoscopic description. In its final form the model can be written as a set of Volterra integrodifferential equations. We consider the role of age-distributed delays for death times and the intracellular (eclipse) phase. These processes are implemented by means of probability distribution functions. The basic reproductive ratio $R_0$ of the infection is properly defined in terms of such distributions by using an analysis of the equilibrium states and their stability. It is concluded that the introduction of distributed delays can strongly modify both the value of $R_0$ and the predictions for the virus loads, so the effects on the infection dynamics are of major importance. We also show how the model presented here can be applied to some simple situations where direct comparison with experiments is possible. Specifically, phage-bacteria interactions are analysed. The dynamics of the eclipse phase for phages is characterized analytically, which allows us to compare the performance of three different fittings proposed before for the one-step growth curve.
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