The precursor ESA mission LISA-Pathfinder, to be flown in 2013, aims at demonstrating the feasibility of the free-fall, necessary for LISA, the upcoming space-born gravitational wave observatory. LISA Technology Package (LTP) is planned to carry out a number of experiments, whose main targets are to identify and measure the disturbances on each test-mass, in order to reach an unprecedented low-level residual force noise. To fulfill this plan, it is then necessary to correctly design, set-up and optimize the experiments to be performed on-flight and do a full system parameter estimation. Here we describe the progress on the non-linear analysis using the methods developed in the framework of the textit{LTPDA Toolbox}, an object-oriented MATLAB Data Analysis environment: the effort is to identify the critical parameters and remove the degeneracy by properly combining the results of different experiments coming from a closed-loop system like LTP.
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