In this paper, we consider the systems with trajectories originating in the nonnegative orthant becoming nonnegative after some finite time transient. First we consider dynamical systems (i.e., fully observable systems with no inputs), which we call eventually positive. We compute forward-invariant cones and Lyapunov functions for these systems. We then extend the notion of eventually positive systems to the input-output system case. Our extension is performed in such a manner, that some valuable properties of classical internally positive input-output systems are preserved. For example, their induced norms can be computed using linear programming and the energy functions have nonnegative derivatives.