We first give a direct proof of a basis theorem for the cyclotomic Yokonuma-Hecke algebra $Y_{r,n}^{d}(q).$ Our approach follows Kleshchevs, which does not use the representation theory of $Y_{r,n}^{d}(q),$ and so it is very different from that of [ChP2]. We also present two applications. Then we prove that the cyclotomic Yokonuma-Hecke algebra $Y_{r,n}^{d}(q)$ is cellular by constructing an explicit cellular basis, and show that the Jucys-Murphy elements for $Y_{r,n}^{d}(q)$ are JM-elements in the abstract sense. In the appendix, we shall develop the fusion procedure for $Y_{r,n}^{d}(q).$