Let $U_q(mathfrak{g})$ be a twisted affine quantum group of type $A_{N}^{(2)}$ or $D_{N}^{(2)}$ and let $mathfrak{g}_{0}$ be the finite-dimensional simple Lie algebra of type $A_{N}$ or $D_{N}$. For a Dynkin quiver of type $mathfrak{g}_{0}$, we define a full subcategory ${mathcal C}_{Q}^{(2)}$ of the category of finite-dimensional integrable $U_q(mathfrak{g})$-modules, a twisted version of the category ${mathcal C}_{Q}$ introduced by Hernandez and Leclerc. Applying the general scheme of affine Schur-Weyl duality, we construct an exact faithful KLR-type duality functor ${mathcal F}_{Q}^{(2)}: Rep(R) rightarrow {mathcal C}_{Q}^{(2)}$, where $Rep(R)$ is the category of finite-dimensional modules over the quiver Hecke algebra $R$ of type $mathfrak{g}_{0}$ with nilpotent actions of the generators $x_k$. We show that ${mathcal F}_{Q}^{(2)}$ sends any simple object to a simple object and induces a ring isomorphism $K(Rep(R)) simeq K({mathcal C}_{Q}^{(2)})$.
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