Finite temperature charmonium spectral functions in the pseudoscalar and vector channels are studied in lattice QCD with 2+1 flavours of dynamical Wilson quarks, on fine isotropic lattices (with a lattice spacing of 0.057 fm), with a non-physical pion mass of $m_{pi} approx$ 545 MeV. The highest temperature studied is approximately $1.4 T_c$. Up to this temperature no significant variation of the spectral function is seen in the pseudoscalar channel. The vector channel shows some temperature dependence, which seems to be consistent with a temperature dependent low frequency peak related to heavy quark transport, plus a temperature independent term at omega>0. These results are in accord with previous calculations using the quenched approximation.