We study the changes in the spatial distribution of vortices in a rotating Bose-Einstein condensate due to an increasing anisotropy of the trapping potential. Once the rotational symmetry is broken, we find that the vortex system undergoes a rich variety of structural changes, including the formation of zig-zag and linear configurations. These spatial re-arrangements are well signaled by the change in the behavior of the vortex-pattern eigenmodes against the anisotropy parameter. The existence of such structural changes opens up possibilities for the coherent exploitation of effective many-body systems based on vortex patterns.
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