A $p$-adic Schr{o}dinger-type operator $D^{alpha}+V_Y$ is studied. $D^{alpha}$ ($alpha>0$) is the operator of fractional differentiation and $V_Y=sum_{i,j=1}^nb_{ij}<delta_{x_j}, cdot>delta_{x_i}$ $(b_{ij}inmathbb{C})$ is a singular potential containing the Dirac delta functions $delta_{x}$ concentrated on points ${x_1,...,x_n}$ of the field of $p$-adic numbers $mathbb{Q}_p$. It is shown that such a problem is well-posed for $alpha>1/2$ and the singular perturbation $V_Y$ is form-bounded for $alpha>1$. In the latter case, the spectral analysis of $eta$-self-adjoint operator realizations of $D^{alpha}+V_Y$ in $L_2(mathbb{Q}_p)$ is carried out.