We develop the general theory of Noether symmetries for constrained systems. In our derivation, the Dirac bracket structure with respect to the primary constraints appears naturally and plays an important role in the characterization of the conserved quantities associated to these Noether symmetries. The issue of projectability of these symmetries from tangent space to phase space is fully analyzed, and we give a geometrical interpretation of the projectability conditions in terms of a relation between the Noether conserved quantity in tangent space and the presymplectic form defined on it. We also examine the enlarged formalism that results from taking the Lagrange multipliers as new dynamical variables; we find the equation that characterizes the Noether symmetries in this formalism. The algebra of generators for Noether symmetries is discussed in both the Hamiltonian and Lagrangian formalisms. We find that a frequent source for the appearance of open algebras is the fact that the transformations of momenta in phase space and tangent space only coincide on shell. Our results apply with no distinction to rigid and gauge symmetries; for the latter case we give a general proof of existence of Noether gauge symmetries for theories with first and second class constraints that do not exhibit tertiary constraints in the stabilization algorithm. Among some examples that illustrate our results, we study the Noether gauge symmetries of the Abelian Chern-Simons theory in $2n+1$ dimensions. An interesting feature of this example is that its primary constraints can only be identified after the determination of the secondary constraint. The example is worked out retaining all the original set of variables.
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