We develop the Gutzwiller approximation method to obtain the renormalized Hamiltonian of the SU(4) $t$-$J$ model, with the corresponding renormalization factors. Subsequently, a mean-field theory is employed on the renormalized Hamiltonian of the model on the honeycomb lattice under the scenario of a cooperative condensation of carriers moving in the resonating valence bond state of flavors. In particular, we find the extended $s$-wave superconductivity is much more favorable than the $d+id$ superconductivity in the doping range close to quarter filling. The pairing states of the SU(4) case reveal the property that the spin-singlet pairing and the spin-triplet pairing can exist simultaneously. Our results might provide new insights into the twisted bilayer graphene system.