We use autoregressive hidden Markov models and a time-frequency approach to create meaningful quantitative descriptions of behavioral characteristics of cerebellar ataxias from wearable inertial sensor data gathered during movement. Wearable sensor data is relatively easily collected and provides direct measurements of movement that can be used to develop useful behavioral biomarkers. Sensitive and specific behavioral biomarkers for neurodegenerative diseases are critical to supporting early detection, drug development efforts, and targeted treatments. We create a flexible and descriptive set of features derived from accelerometer and gyroscope data collected from wearable sensors while participants perform clinical assessment tasks, and with them estimate disease status and severity. A short period of data collection ($<$ 5 minutes) yields enough information to effectively separate patients with ataxia from healthy controls with very high accuracy, to separate ataxia from other neurodegenerative diseases such as Parkinsons disease, and to give estimates of disease severity.
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