RX J1713.7-3946 is a unique core-collapse SNR that emits bright TeV gamma-rays and synchrotron X-rays caused by cosmic rays, in addition to interactions with interstellar gas clouds. We report here on results of ALMA $^{12}$CO($J$ = 1-0) observations toward the northwestern shell of the SNR. We newly found three molecular complexes consisting of dozens of shocked molecular cloudlets and filaments with typical radii of $sim$0.03-0.05 pc and densities of $sim$$10^4$ cm$^{-3}$. These cloudlets and filaments are located not only along synchrotron X-ray filaments, but also in the vicinity of X-ray hotspots with month or year-scale time variations. We argue that X-ray hotspots were generated by shock-cloudlet interactions through magnetic-field amplification up to mG. The ISM density contrast of $sim$$10^5$, coexistence of molecular cloudlets and low-density diffuse medium of $sim$0.1 cm$^{-3}$, is consistent with such a magnetic field amplification as well as a wind-bubble scenario. The small-scale cloud structures also affect hadronic gamma-ray spectra considering the magnetic field amplification on surface and inside clouds.
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