Starburst galaxies, which are known as reservoirs of high-energy cosmic-rays, can represent an important high-energy neutrino factory contributing to the diffuse neutrino flux observed by IceCube. In this paper, we revisit the constraints affecting the neutrino and gamma-ray hadronuclear emissions from this class of astrophysical objects. In particular, we go beyond the standard prototype-based approach leading to a simple power-law neutrino flux, and investigate a more realistic model based on a data-driven blending of spectral indexes, thereby capturing the observed changes in the properties of individual emitters. We then perform a multi-messenger analysis considering the extragalactic gamma-ray background (EGB) measured by Fermi-LAT and different IceCube data samples: the 7.5-year High-Energy Starting Events (HESE) and the 6-year high-energy cascade data. Along with starburst galaxies, we take into account the contributions from blazars and radio galaxies as well as the secondary gamma-rays from electromagnetic cascades. Remarkably, we find that, differently from the highly-constrained prototype scenario, the spectral index blending allows starburst galaxies to account for up to $40%$ of the HESE events at $95.4%$ CL, while satisfying the limit on the non-blazar EGB component. Moreover, values of $mathcal{O}(100~mathrm{PeV})$ for the maximal energy of accelerated cosmic-rays by supernovae remnants inside the starburst are disfavoured in our scenario. In broad terms, our analysis points out that a better modeling of astrophysical sources could alleviate the tension between neutrino and gamma-ray data interpretation.
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