The Marshall Grazing Incidence Spectrometer {it MaGIXS} is a sounding rocket experiment that will observe the soft X-ray spectrum of the Sun from 24 - 6.0 AA (0.5 - 2.0 keV) and is scheduled for launch in 2021. Component and instrument level calibrations for the {it MaGIXS} instrument are carried out using the X-ray and Cryogenic Facility (XRCF) at NASA Marshall Space Flight Center. In this paper, we present the calibration of the incident X-ray flux from the electron impact source with different targets at the XRCF using a CCD camera; the photon flux at the CCD was low enough to enable its use as a photon counter i.e. the ability to identify individual photon hits and calculate their energy. The goal of this paper is two-fold: 1) to confirm that the flux measured by the XRCF beam normalization detectors is consistent with the values reported in the literature and therefore reliable for {it MaGIXS} calibration and 2) to develop a method of counting photons in CCD images that best captures their number and energy