We examine time dependent Schru007fodinger equation with oscillating boundary condition. More specifically, we use separation of variable technique to construct time dependent rationally extended Pu007foschl-Teller potential (whose solutions are given by in terms of X1 Jacobi exceptional orthogonal polynomials) and its supersymmetric partner, namely the Pu007foschl-Teller potential. We have obtained exact solutions of the Schru007fodinger equation with the above mentioned potentials subjected to some boundary conditions of the oscillating type. A number of physical quantities like the average energy, probability density, expectation values etc. have also been computed for both the systems and compared with each other.