We demonstrate that electron electric dipole moment experiments with molecules in paramagnetic state are sensitive to $P,T$-violating nuclear forces and other $CP$-violating parameters in the hadronic sector. These experiments, in particular, measure the coupling constant $C_{SP}$ of the $CP$-odd contact semileptonic interaction. We establish relations between $C_{SP}$ and different $CP$-violating hadronic parameters including strength constants of the $CP$-odd nuclear potentials, $CP$-odd pion-nucleon interactions, quark-chromo EDM and QCD vacuum angle. These relations allow us to find limits on various $CP$-odd hadronic parameters.