Construction of a large-scale cryogenic gravitational-wave telescope KAGRA has been completed and the four sapphire test masses have been installed in cryostat vacuum chambers. It recently turned out that a sapphire substrate used for one of the input test masses shows a characteristic strcuture in its transmission map due to non-uniformity of the crystal. We performed an interferometer simulation to see the influence of the non-uniformity using measured transmission/reflection maps.
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