The routine atomic-resolution structure determination of single particles is expected to have profound implications for probing the structure-function relationship in systems ranging from energy materials to biological molecules. Extremely-bright, ultrashort-pulse X-ray sources---X-ray Free Electron Lasers (XFELs)---provide X-rays that can be used to probe ensembles of nearly identical nano-scale particles. When combined with coherent diffractive imaging, these objects can be imaged; however, as the resolution of the images approaches the atomic scale, the measured data are increasingly difficult to obtain and, during an X-ray pulse, the number of photons incident on the two-dimensional detector is much smaller than the number of pixels. This latter concern, the signal sparsity, materially impedes the application of the method. We demonstrate an experimental analog using a synchrotron X-ray source that yields signal levels comparable to those expected from single biomolecules illuminated by focused XFEL pulses. The analog experiment provides an invaluable cross-check on the fidelity of the reconstructed data that is not available during XFEL experiments. We establish---using this experimental data---that a sparsity of order $1.3times10^{-3}$ photons per pixel per frame can be overcome, lending vital insight to the solution of the atomic-resolution XFEL single particle imaging problem by experimentally demonstrating 3D coherent diffractive imaging from photon-sparse random projections.
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