We verify a conjecture of Perelman, which states that there exists a canonical Ricci flow through singularities starting from an arbitrary compact Riemannian 3-manifold. Our main result is a uniqueness theorem for such flows, which, together with an earlier existence theorem of Lott and the second named author, implies Perelmans conjecture. We also show that this flow through singularities depends continuously on its initial condition and that it may be obtained as a limit of Ricci flows with surgery. Our results have applications to the study of diffeomorphism groups of three manifolds --- in particular to the Generalized Smale Conjecture --- which will appear in a subsequent paper.
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