We report a systematic study of the structure, electric and magnetic properties of Ca$_3$Co$_{2-x}$Mn$_x$O$_6$ single crystals with $x =$ 0.72 and 0.26. The DC and AC magnetic susceptibilities display anomalies with characteristic of the spin freezing. The crystals show ferroelectric transition at 40 K and 35 K ($T_{FE}$) for $x =$ 0.72 and 0.26, respectively, with a large value of 1400 $mu$C/m$^2$ at 8 K for electric polarization ($P_c$) along the spin-chain ($c$-axis) direction. Interestingly, the electric polarization perpendicular to the chain direction ($P_{ab}$) can also be detected and has value of 450 and 500 $mu$C/m$^2$ at 8 K for the $x =$ 0.72 and 0.26 samples, respectively. The specific heat and magnetic susceptibility show no anomaly around $T_{FE}$, which means that the electric polarization of these samples has no direct relationship with the magnetism. The X-ray diffraction and the Raman spectroscopy indicate that these samples may undergo Jahn-Teller distortions that could be the reason of electric polarization.
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