The GEp-III and GEp-2$gamma$ experiments, carried out in Jefferson Labs Hall C from 2007-2008, consisted of measurements of polarization transfer in elastic electron-proton scattering at momentum transfers of $Q^2 = 2.5, 5.2, 6.8,$ and $8.54$ GeV$^2$. These measurements were carried out to improve knowledge of the proton electromagnetic form factor ratio $R = mu_p G_E^p/G_M^p$ at large values of $Q^2$ and to search for effects beyond the Born approximation in polarization transfer observables at $Q^2 = 2.5$ GeV$^2$. The final results of both experiments were reported in a recent archival publication. A full reanalysis of the data from both experiments was carried out in order to reduce the systematic and, for the GEp-2$gamma$ experiment, statistical uncertainties. This technical note provides additional details of the final analysis omitted from the main publication, including the final evaluation of the systematic uncertainties.
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