A nonautonomous version of the ultradiscrete hungry Toda lattice with a finite lattice boundary condition is derived by applying reduction and ultradiscretization to a nonautonomous two-dimensional discrete Toda lattice. It is shown that the derived ultradiscrete system has a direct connection to the box-ball system with many kinds of balls and finite carrier capacity. Particular solutions to the ultradiscrete system are constructed by using the theory of some sort of discrete biorthogonal polynomials.