In this paper, $E_6$ and especially $E_7$ GUT are considered in the F-theory setting in view of the free fermionic construction of the $4D$ heterotic string. In particular, the NAHE-Based LRS model of cite{Cleaver:2000ds, Cleaver:2002ps} is revisited as an illustration where the starting point was taken to be the $N=4$, $E_7 times E_7 times SO(16)$ which through the use of boundary condition basis vectors is reduced to obtain the flipped $SO(10)$ GUT symmetry. We also seek to extend the results of cite{Faraggi:2002ah} in the case of the flipped $SU(5)$ to home in on the flipped $SO(10)$ vacua from the Horv{a}va-Witten theory where the $E_8$ gauge group on the observable sector decomposes as $E_{8}supset E_{6}times SU(3)$ with $E_{6}$ being the gauge group of the effective field theory. We find for the $E_{6}$ GUT symmetry, solutions of type A and solutions of type B where the Hirzebruch surfaces are considered for the base contrary to cite{Faraggi:2002ah} where flipped $SU(5)$ vacua were studied and only solutions of type B were found. Moreover, no solutions are found in the case of the base being the del Pezzo surfaces. Furthermore, this goes hand in hand with the heterotic, low-energy string-derived effective model discussed in cite{Ashfaque:2016psv,Ashfaque:2016ydg}.
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