We obtain a kinetic description of spatially averaged dynamics of particle systems. Spatial averaging is one of the three types of averaging relevant within the Irwing-Kirkwood procedure (IKP), a general method for deriving macroscopic equations from molecular models. The other two types, ensemble averaging and time averaging, have been extensively studied, while spatial averaging is relatively less understood. We show that the average density, linear momentum, and kinetic energy used in IKP can be obtained from a single average quantity, called the generating function. A kinetic equation for the generating function is obtained and tested numerically on Lennard-Jones oscillator chains.