We have updated our publicly available dust radiative transfer code (HOCHUNK3D) to include new emission processes and various 3-D geometries appropriate for forming stars. The 3-D geometries include warps and spirals in disks, accretion hotspots on the central star, fractal clumping density enhancements, and misaligned inner disks. Additional axisymmetric (2-D) features include gaps in disks and envelopes, puffed-up inner rims in disks, multiple bipolar cavity walls, and iteration of disk vertical structure assuming hydrostatic equilibrium. We include the option for simple power-law envelope geometry, which combined with fractal clumping, and bipolar cavities, can be used to model evolved stars as well as protostars. We include non-thermal emission from PAHs and very small grains, and external illumination from the interstellar radiation field. The grid structure was modified to allow multiple dust species in each cell; based on this, a simple prescription is implemented to model dust stratification. We describe these features in detail, and show example calculations of each. Some of the more interesting results include the following: 1) Outflow cavities may be more clumpy than infalling envelopes. 2) PAH emission in high-mass stars may be a better indicator of evolutionary stage than the broadband SED slope; and related to this, 3) externally illuminated clumps and high-mass stars in optically thin clouds can masquerade as YSOs. 4) Our hydrostatic equilibrium models suggest that dust settling is likely ubiquitous in T Tauri disks, in agreement with previous observations.
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