Dynamics of the double-well Bose-Einstein condensate subject to energy dissipation is studied by solving a reduced one-dimensional time-dependent Gross-Pitaevskii equation numerically. We first reproduce the phase space diagram of the system without dissipation systematically, and then calculate evolutionary trajectories of dissipated systems. It is clearly shown that the dissipation can drive the system to evolve gradually from the $pi$-mode quantum macroscopic self-trapping state, a state with relatively higher energy, to the lowest energy stationary state in which particles distribute equally in the two wells. The average phase and phase distribution in each well are discussed as well. We show that the phase distribution varies slowly in each well but may exhibit abrupt changes near the barrier. This sudden change occurs at the minimum position in particle density profile. We also note that the average phase in each well varies much faster with time than the phase difference between two wells.
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