We theoretically evaluate establishing remote entanglement between distinguishable matter qubits through interference and detection of two emitted photons. The fidelity of the entanglement operation is analyzed as a function of the temporal and frequency mode-matching between the photons emitted from each quantum memory. With a general analysis, we define limits on the absolute magnitudes of temporal and frequency mode-mismatches in order to maintain entanglement fidelities greater than 99% with two-photon detection efficiencies greater than 90%. We apply our analysis to several selected systems of quantum memories. Results indicate that high fidelities may be achieved in each system using current experimental techniques, while maintaining acceptable rates of entanglement. Thus, it might be possible to use two-photon-mediated entanglement operations between distinguishable quantum memories to establish a network for quantum communication and distributed quantum computation.
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