We present high angular resolution (0.5-2.0) observations of the mm continuum and the 12CO(J=3-2), 13CO(J=3-2), 13CO(J=2-1), C18O(J=2-1), HCN(J=3-2), HCO+(J=4-3) and HCO+(J=3-2) line emission in the circumnuclear disk (r=100pc) of the proto-typical Seyfert type-2 galaxy NGC1068, carried out with the Submillimeter Array. We further include in our analysis new 13CO(J=1-0) and improved 12CO(J=2-1) observations of NGC1068 at high angular resolution (1.0-2.0) and sensitivity, conducted with the IRAM Plateau de Bure Interferometer. Based on the complex dynamics of the molecular gas emission indicating non-circular motions in the central ~100pc, we propose a scenario in which part of the molecular gas in the circumnuclear disk of NGC1068 is radially blown outwards as a result of shocks. This shock scenario is further supported by quite warm (Tkin>=200K) and dense (nH2=10^4cm^-3) gas constrained from the observed molecular line ratios. The HCN abundance in the circumnuclear disk is found to be [HCN]/[12CO]=10^-3.5. This is slightly higher than the abundances derived for galactic and extragalactic starforming/starbursting regions. This results lends further support to X-ray enhanced HCN formation in the circumnuclear disk of NGC1068, as suggested by earlier studies. The HCO+ abundance ([HCO+]/[12CO]=10^-5) appears to be somewhat lower than that of galactic and extragalactic starforming/starbursting regions. When trying to fit the cm to mm continuum emission by different thermal and non-thermal processes, it appears that electron-scattered synchrotron emission yields the best results while thermal free-free emission seems to over-predict the mm continuum emission.
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