We present evidence for a correlation between the observed properties of hot Jupiter emission spectra and the activity levels of the host stars measured using Ca II H & K emission lines. We find that planets with dayside emission spectra that are well-described by standard 1D atmosphere models with water in absorption (HD 189733, TrES-1, TrES-3, WASP-4) orbit chromospherically active stars, while planets with emission spectra that are consistent with the presence of a strong high-altitude temperature inversion and water in emission orbit quieter stars. We estimate that active G and K stars have Lyman alpha fluxes that are typically a factor of 4-7 times higher than quiet stars with analogous spectral types, and propose that the increased UV flux received by planets orbiting active stars destroys the compounds responsible for the formation of the observed temperature